RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 MOKQ9UQ07 419 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 TSC22D4Q9Y3Q8 395 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 PCDHGA11Q9Y5H2 935 aa13.42□□□□□ -0.26
CLSTN3-216ENST00000545663 A0A1W2PRB8 838 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 CCDC189A1A4V9 331 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 K7EPI3 171 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 WISP3O95389 354 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 NUDT17P0C025 328 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 IFNGR1P15260 489 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 CD1DP15813 335 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 STMN1P16949 149 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 ME2P23368 584 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 CRABP2P29373 138 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 SERPINF1P36955 418 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 RFX3P48380 749 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 FOXG1P55316 489 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 PSG6Q00889 435 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 C17orf67Q0P5P2 114 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 RIN1Q13671 783 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 RIBC1Q8N443 379 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 TEX9Q8N6V9 391 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 CDYL2Q8N8U2 506 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF75CPQ92670 426 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 ZNF300Q96RE9 604 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 PAFAH2Q99487 392 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 PSD2Q9BQI7 771 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 MCMBPQ9BTE3 642 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 ROPN1BQ9BZX4 212 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 SAP130Q9H0E3 1048 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 NARFLQ9H6Q4 476 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 ROPN1Q9HAT0 212 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 GP6Q9HCN6 339 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 MED17Q9NVC6 651 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 OPTCQ9UBM4 332 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 GRIP1Q9Y3R0 1128 aa13.41□□□□□ -0.26
CLSTN3-216ENST00000545663 CIB4A0PJX0 185 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 C1orf226A1L170 272 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 CCT8L1PA6NM43 557 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 CXorf49A8MYA2 514 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 H0YIV9 168 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 UTS2O95399 124 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 MSMBP08118 114 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 ADRA2CP18825 462 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 HSD17B3P37058 310 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 IFFO1Q0D2I5 559 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 UAP1Q16222 522 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 PLPPR5Q32ZL2 321 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 ARL13AQ5H913 290 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 CARM1Q86X55 608 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 WDR31Q8NA23 367 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 WDR20Q8TBZ3 569 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 CPNE4Q96A23 557 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 TBL1XR1Q9BZK7 514 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 BCO1Q9HAY6 547 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 DDX28Q9NUL7 540 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 PDP1Q9P0J1 537 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 PSMC3IPQ9P2W1 217 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 MCM8Q9UJA3 840 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 RNF11Q9Y3C5 154 aa13.4□□□□□ -0.26
CLSTN3-216ENST00000545663 A0A087WZY1 265 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 POC1B-GALNT4F8VUJ3 575 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 WNT9BO14905 357 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 PHGDHO43175 533 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 BCAS2O75934 225 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 S100BP04271 92 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 SNRPAP09012 282 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 ALDH9A1P49189 494 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 CLK3P49761 638 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 SERPINB8P50452 374 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 MAPK12P53778 367 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 RAB10P61026 200 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 PHEXP78562 749 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 SLC25A3Q00325 362 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 UGT2A3Q6UWM9 527 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF100Q8IYN0 542 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF786Q8N393 782 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 GATSQ8NAP1 163 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 TOR1AIP2Q8NFQ8 470 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 OR7G2Q8NG99 324 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF675Q8TD23 568 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 TM4SF18Q96CE8 201 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 TIGARQ9NQ88 270 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 PFDN4Q9NQP4 134 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF780BQ9Y6R6 833 aa13.39□□□□□ -0.27
CLSTN3-216ENST00000545663 C7orf72A4D263 438 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 FOXE1O00358 373 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 KERAO60938 352 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 PIAS1O75925 651 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 BCL10O95999 233 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 IDH3GP51553 393 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 PSPHP78330 225 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 PRR5P85299 388 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 ZNF155Q12901 538 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 GABRA6Q16445 453 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 GRAMD1BQ3KR37 738 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 TMEM176BQ3YBM2 270 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 CYP27C1Q4G0S4 372 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 LIPJQ5W064 366 aa13.38□□□□□ -0.27
CLSTN3-216ENST00000545663 TRABD2AQ86V40 505 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms