RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TMEM41AQ96HV5 264 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PTDSS2Q9BVG9 487 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GSDMCQ9BYG8 508 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZYG11BQ9C0D3 744 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SLC39A8Q9C0K1 460 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ABCG5Q9H222 651 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PIGMQ9H3S5 423 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZCCHC4Q9H5U6 513 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ESRP2Q9H6T0 727 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 C1GALT1Q9NS00 363 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GPR27Q9NS67 375 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 DDIT4Q9NX09 232 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 OR6C2Q9NZP2 312 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 MYEF2Q9P2K5 600 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 ASH2LQ9UBL3 628 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZNF282Q9UDV7 671 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 MMP17Q9ULZ9 603 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 WNT6Q9Y6F9 365 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PIAS3Q9Y6X2 628 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ENPP4Q9Y6X5 453 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 A0A1W2PQF6 199 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 C1orf226A1L170 272 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 CDC7O00311 574 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 FAAHO00519 579 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PHYHO14832 338 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 KDELR3O43731 214 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 HPGDSO60760 199 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 UBL3O95164 117 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 FHP07954 510 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PRF1P14222 555 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 IFNGR1P15260 489 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SOX3P41225 446 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GAS1P54826 345 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TAF1AQ15573 450 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 SGCAQ16586 387 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LY6G5CQ5SRR4 150 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 UTS2BQ765I0 119 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 KRT78Q8N1N4 520 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SVBPQ8N300 66 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TMEM105Q8N8V8 129 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 OR52B6Q8NGF0 335 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RPLP0P6Q8NHW5 317 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 WFDC5Q8TCV5 224 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 CD200R1Q8TD46 325 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SFT2D1Q8WV19 159 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 NR4A3Q92570 626 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ELP4Q96EB1 424 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ABHD17AQ96GS6 310 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 NARS2Q96I59 477 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 ART5Q96L15 291 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TEFMQ96QE5 360 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 EGLN1Q9GZT9 426 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TKTL2Q9H0I9 626 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LINC00597Q9H2U6 94 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TBC1D17Q9HA65 648 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SPACA1Q9HBV2 294 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 KLHL1Q9NR64 748 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SERINC1Q9NRX5 453 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RXFP3Q9NSD7 469 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ACER3Q9NUN7 267 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 DHRS7Q9Y394 339 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PPIL1Q9Y3C6 166 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZNF451Q9Y4E5 1061 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SNX11Q9Y5W9 270 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 C2orf74A8MZ97 194 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GPR89AB7ZAQ6 455 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 H0YIV9 168 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PPM1DO15297 605 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 CIDEAO60543 219 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 UGDHO60701 494 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 HTR3BO95264 441 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LPLP06858 475 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GPR89BP0CG08 455 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ACP2P11117 423 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RPA2P15927 270 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ENGP17813 658 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 CR2P20023 1033 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 NFYAP23511 347 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 ACAA2P42765 397 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 PTGER3P43115 390 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 AGTR2P50052 363 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GDI2P50395 445 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 METAP1P53582 386 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PRSS12P56730 875 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 CD81P60033 236 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 MRPS10P82664 201 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 LGALS3BPQ08380 585 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GAS6Q14393 721 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 KCNAB1Q14722 419 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 HEPACAMQ14CZ8 416 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 P2RY14Q15391 338 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SF1Q15637 639 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 CHRNA6Q15825 494 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 EXOC3L2Q2M3D2 409 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 EIF2S3LQ2VIR3 472 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 SLC36A2Q495M3 483 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SYTL3Q4VX76 610 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 LBHQ53QV2 105 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 OXLD1Q5BKU9 147 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ARMC12Q5T9G4 340 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms