RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 IL10RBQ08334 325 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 AQP6Q13520 282 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 PCK2Q16822 640 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 SFXN4Q6P4A7 337 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 CPOQ8IVL8 374 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 PSMG2Q969U7 264 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 INTS12Q96CB8 462 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 L3HYPDHQ96EM0 354 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 MSLNLQ96KJ4 702 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ZNF681Q96N22 645 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ZNF300Q96RE9 604 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 ZNF587Q96SQ5 575 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 WWTR1Q9GZV5 400 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 PARP12Q9H0J9 701 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 PTGES2Q9H7Z7 377 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ATF5Q9Y2D1 282 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 SLCO1B1Q9Y6L6 691 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ZNF320A2RRD8 509 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 MEGF11A6BM72 1044 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 RTCAO00442 366 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 FBXO45P0C2W1 286 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 SFTA3P0C7M3 94 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 RRASP10301 218 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ACP2P11117 423 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 EPHA1P21709 976 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ACHEP22303 614 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 HOXA10P31260 410 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 RAB28P51157 221 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 FXYD4P59646 89 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 RPS13P62277 151 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 HSD11B2P80365 405 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 Q5PR19 223 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ARFGAP1Q8N6T3 406 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 SLC35F5Q8WV83 523 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 CPNE4Q96A23 557 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 SDSLQ96GA7 329 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 OR51M1Q9H341 326 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 RNF167Q9H6Y7 350 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 SDHAF3Q9NRP4 125 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 PIGVQ9NUD9 493 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 NEO1Q92859 1461 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 HHLA1C9JL84 531 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 CSO75390 466 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 ACAA1P09110 424 aaPredicted RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 OR12D1P0DN82 309 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 CX3CR1P49238 355 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 POLR2GP62487 172 aaKnown RBP eCLIP8.26□□□□□ -1.09
YBX3-208ENST00000540447 LY6KQ17RY6 165 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 SYPL2Q5VXT5 272 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 GLCCI1Q86VQ1 547 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 THOC6Q86W42 341 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 OR52N1Q8NH53 320 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 MAL2Q969L2 176 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 KATNB1Q9BVA0 655 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 ST6GALNAC4Q9H4F1 302 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 EXOSC3Q9NQT5 275 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 GPR173Q9NS66 373 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 RALYQ9UKM9 306 aaKnown RBP8.26□□□□□ -1.09
YBX3-208ENST00000540447 NENFQ9UMX5 172 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 LMTK3Q96Q04 1460 aa8.26□□□□□ -1.09
YBX3-208ENST00000540447 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 LOC105371267A0A1B0GV96 52 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 ZNF724A8MTY0 619 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 PDGFBP01127 241 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 TTRP02766 147 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 ELFN1P0C7U0 828 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 GNSP15586 552 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 CD81P60033 236 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 HIST1H3AP68431 136 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SIM1P81133 766 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 PRR27Q6MZM9 219 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 KDELC1Q6UW63 502 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 MEX3BQ6ZN04 569 aaKnown RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 ETV3LQ6ZN32 361 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SULF2Q8IWU5 870 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 NECAP1Q8NC96 275 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SLC24A4Q8NFF2 622 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 OR5M3Q8NGP4 307 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 OR1J2Q8NGS2 313 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 GOT1L1Q8NHS2 421 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 BORCS8Q96FH0 119 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 NUDT16L1Q9BRJ7 211 aaKnown RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 C11orf84Q9BUA3 381 aaPredicted RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 PCBD2Q9H0N5 130 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SOHLH2Q9NX45 425 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 CDHR4A6H8M9 788 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 LINC00862A6NCI5 91 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SLC9B1P1A6NJY1 282 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 RFPL4AA6NLU0 287 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 RFPL4AL1F8VTS6 287 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 RGS11O94810 467 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SERPINA5P05154 406 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 NTF3P20783 257 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 SGSHP51688 502 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 NKX3-2P78367 333 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 RPL24P83731 157 aaKnown RBP8.25□□□□□ -1.09
YBX3-208ENST00000540447 UGCGQ16739 394 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 TMEM31Q5JXX7 168 aa8.25□□□□□ -1.09
YBX3-208ENST00000540447 Q6ZPB1 254 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms