RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ELOVL7A1L3X0 281 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 FAM220BPB1ANY3 271 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 G3V3Y1 287 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 GSC2O15499 205 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 SMPD2O60906 423 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 NME6O75414 186 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 PDE5AO76074 875 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 IGKV3-11P04433 115 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ATP6V1C1P21283 382 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 CNR1P21554 472 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ME2P23368 584 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 RFX3P48380 749 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 MAN2A2P49641 1150 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 EMDP50402 254 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 SSR4P51571 173 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 NRG3P56975 720 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 RNF4P78317 190 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 POU6F2P78424 691 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 SORDQ00796 357 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC10A1Q14973 349 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 NNATQ16517 81 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 SPATS1Q496A3 300 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ULK2Q8IYT8 1036 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 C11orf65Q8NCR3 313 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 CDS1Q92903 461 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 GIMAP5Q96F15 307 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 LCORQ96JN0 433 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 STACQ99469 402 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 CADM1Q9BY67 442 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 WWTR1Q9GZV5 400 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 PIGUQ9H490 435 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 IKZF5Q9H5V7 419 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 KAT8Q9H7Z6 458 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 JKAMPQ9P055 326 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ABCD2Q9UBJ2 740 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ANGPT4Q9Y264 503 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 ROS1P08922 2347 aa11.34□□□□□ -0.59
CLSTN3-208ENST00000538933 TGP01266 2768 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 MBD3L4A6NDZ8 208 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 MBD3L5A6NJ08 208 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 HCN1O60741 890 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 OR2J2O76002 312 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 OR6B1O95007 311 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 PSMG1O95456 288 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 AK1P00568 194 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 CLPSP04118 112 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 BCHEP06276 602 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 ACP2P11117 423 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 PPICP45877 212 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 GSK3BP49841 420 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF136P52737 540 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 CRISP3P54108 245 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 PSMD4P55036 377 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 RBBP4Q09028 425 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 BNIP2Q12982 314 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 DUSP8Q13202 625 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SCARB2Q14108 478 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 EBPQ15125 230 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 DUSP5Q16690 384 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 DECR1Q16698 335 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 INTS11Q5TA45 600 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 IL20RBQ6UXL0 311 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 KIF18BQ86Y91 864 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC30A8Q8IWU4 369 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 C9orf40Q8IXQ3 194 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 GPALPP1Q8IXQ4 340 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 MICU2Q8IYU8 434 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 TAGAPQ8N103 731 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 FBXW8Q8N3Y1 598 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC16A11Q8NCK7 471 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 OR8K3Q8NH51 312 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC22A8Q8TCC7 542 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 MIPOL1Q8TD10 442 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 TMEM158Q8WZ71 300 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SMPDL3BQ92485 455 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 PIK3R3Q92569 461 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 CCDC124Q96CT7 223 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 LRRC46Q96FV0 321 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 REXO5Q96IC2 774 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 CLPTM1LQ96KA5 538 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 LRGUKQ96M69 825 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 VSTM2LQ96N03 204 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 FAM173AQ9BQD7 235 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 LMF2Q9BU23 707 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 SERHL2Q9H4I8 314 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 LIN28AQ9H9Z2 209 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 DUSP22Q9NRW4 184 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 CALML5Q9NZT1 146 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 LIPT1Q9Y234 373 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 DTX4Q9Y2E6 619 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 NPFFR2Q9Y5X5 522 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 GMEB1Q9Y692 573 aa11.33□□□□□ -0.6
CLSTN3-208ENST00000538933 TRGV5A0A0B4J1U4 118 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 CFAP73A6NFT4 308 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 FRG2CA6NGY1 282 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 A8MVJ9 347 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 HMGN4O00479 90 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 WIPF1O43516 503 aa11.32□□□□□ -0.6
CLSTN3-208ENST00000538933 NKX2-2O95096 273 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms