RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PDGFBP01127 241 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 KRT6BP04259 564 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 KRT8P05787 483 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ATF6P18850 670 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CD9P21926 228 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 FCARP24071 287 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ACAT1P24752 427 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 DNASE1P24855 282 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 HMOX2P30519 316 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CA8P35219 290 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 PTGER4P35408 488 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CYLC1P35663 651 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 MTIF2P46199 727 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 GSSP48637 474 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 KRT6CP48668 564 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ASCL1P50553 236 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CDK9P50750 372 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 KRTAP10-8P60410 259 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SNRPFP62306 86 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 ZNF415Q09FC8 603 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 TSTA3Q13630 321 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 HTR4Q13639 388 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 HERC3Q15034 1050 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SNRNP35Q16560 246 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 KNOP1Q1ED39 458 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 VWC2Q2TAL6 325 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 HLA-BQ31612 363 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ZNF829Q3KNS6 432 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 CFAP221Q4G0U5 840 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 PPM1LQ5SGD2 360 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 WSCD1Q658N2 575 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 TPGS2Q68CL5 300 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 RAET1GQ6H3X3 334 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CENPPQ6IPU0 288 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 MFSD12Q6NUT3 480 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SLC25A47Q6Q0C1 308 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ENPP7Q6UWV6 458 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ANGPTL8Q6UXH0 198 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 LINC00299Q6ZSB3 139 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 TMEM150AQ86TG1 271 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SYVN1Q86TM6 617 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 RTN4RL2Q86UN3 420 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 VPS36Q86VN1 386 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 WDR49Q8IV35 697 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CDK20Q8IZL9 346 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ST13P4Q8IZP2 240 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 EID3Q8N140 333 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ELMOD1Q8N336 334 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 KIF2BQ8N4N8 673 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 LRRC52Q8N7C0 313 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SLC4A11Q8NBS3 891 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 UXS1Q8NBZ7 420 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 LILRB4Q8NHJ6 448 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ITFG1Q8TB96 612 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ADAMTS16Q8TE57 1224 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 GATAD1Q8WUU5 269 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 HEXDCQ8WVB3 486 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SYN2Q92777 582 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 FGF14Q92915 247 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 MOB3AQ96BX8 217 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 NXNL1Q96CM4 212 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SNRNP40Q96DI7 357 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 TCEAL4Q96EI5 215 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SAMD8Q96LT4 415 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 C10orf90Q96M02 699 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ERGIC2Q96RQ1 377 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 RANBP9Q96S59 729 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ATOH8Q96SQ7 321 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 DOK1Q99704 481 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 DHRS9Q9BPW9 319 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 RPP25Q9BUL9 199 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 KATNB1Q9BVA0 655 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 TPPP3Q9BW30 176 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SLC2A11Q9BYW1 496 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 OSBPL8Q9BZF1 889 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 PLA2G2FQ9BZM2 168 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ROPN1BQ9BZX4 212 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 DRC3Q9H069 523 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SHARPINQ9H0F6 387 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SDCBP2Q9H190 292 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ROPN1Q9HAT0 212 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 GPN1Q9HCN4 374 aaPredicted RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 TM9SF3Q9HD45 589 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 CHST11Q9NPF2 352 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 KCNN3Q9UGI6 736 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 RWDD2AQ9UIY3 292 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 SNX6Q9UNH7 406 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 UTP11Q9Y3A2 253 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 TEX264Q9Y6I9 313 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 ASCC3Q8N3C0 2202 aaKnown RBP2.94□□□□□ -1.94
USP48-215ENST00000534705 DNAH14Q0VDD8 3507 aa2.94□□□□□ -1.94
USP48-215ENST00000534705 LRP4O75096 1905 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 PCDH15Q96QU1 1955 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 A0A1B0GWJ7 208 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 A0A1W2PPM1 405 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 FAM149AA5PLN7 773 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 TRIM49BA6NDI0 452 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 GOLGA8MH3BSY2 632 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 M0R296 226 aa2.93□□□□□ -1.94
USP48-215ENST00000534705 CYB561D2O14569 222 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms