RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HOXD1Q9GZZ0 328 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 GP6Q9HCN6 339 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 TIGARQ9NQ88 270 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 MKS1Q9NXB0 559 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 KLHL13Q9P2N7 655 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 ICAM5Q9UMF0 924 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 TRAF6Q9Y4K3 522 aa10.11□□□□□ -0.79
VPS28-214ENST00000531032 GPC6Q9Y625 555 aaPredicted RBP10.11□□□□□ -0.79
VPS28-214ENST00000531032 GJE1A6NN92 205 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 KIAA1324LA8MWY0 1029 aaPredicted RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 INAFM1C9JVW0 142 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 NPIPB9F8W1W9 429 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ZNF195O14628 629 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 PIP5K1BO14986 540 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 OIP5O43482 229 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 NPHS1O60500 1241 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 SOX30O94993 753 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 NTN1O95631 604 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 LAMP1P11279 417 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ATP6V1C1P21283 382 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 MAPK1P28482 360 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ATP5J2P56134 94 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 PPP2R2BQ00005 443 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ARL13AQ5H913 290 aaPredicted RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 TMEM201Q5SNT2 666 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 DCST2Q5T1A1 773 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS28-214ENST00000531032 SFRP5Q5T4F7 317 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 NUFIP2Q7Z417 695 aaKnown RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 TUSC5Q8IXB3 177 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 DDIASQ8IXT1 998 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 OR56A1Q8NGH5 318 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 LILRB1Q8NHL6 650 aaPredicted RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 FBXO27Q8NI29 283 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 RAB3IL1Q8TBN0 382 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 REXO5Q96IC2 774 aaKnown RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 PPP3R2Q96LZ3 170 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 TACO1Q9BSH4 297 aaKnown RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 ACTRT3Q9BYD9 372 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ROPN1BQ9BZX4 212 aaPredicted RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 COQ10BQ9H8M1 238 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 ROPN1Q9HAT0 212 aaPredicted RBP10.1□□□□□ -0.79
VPS28-214ENST00000531032 GPATCH2Q9NW75 528 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 SNX8Q9Y5X2 465 aa10.1□□□□□ -0.79
VPS28-214ENST00000531032 FREM1Q5H8C1 2179 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NPIPA5A0A0B4J1W7 369 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NPIPA7E9PJI5 369 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 H3BNH8 94 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 OVOL3O00110 214 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 ETV2O00321 342 aaPredicted RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 SPAG7O75391 227 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 PRKD3O94806 890 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NUDT14O95848 222 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 KRT16P08779 473 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NPIPA8P0DM63 369 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 PRKCAP17252 672 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 ALDH3A1P30838 453 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 CCT3P49368 545 aaKnown RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 ATP12AP54707 1039 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 RPS4XP62701 263 aaKnown RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 SELENBP1Q13228 472 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 PTGR1Q14914 329 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 TSC22D1Q15714 1073 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 TOMM34Q15785 309 aaPredicted RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 KRT71Q3SY84 523 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 TMEM176BQ3YBM2 270 aaPredicted RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 SLC25A53Q5H9E4 307 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NCMAPQ5T1S8 102 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 WDR93Q6P2C0 686 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 SEZ6L2Q6UXD5 910 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 FCRLAQ7L513 359 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 SLC43A2Q8N370 569 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 NATD1Q8N6N6 113 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 BANPQ8N9N5 519 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 SFXN5Q8TD22 340 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 GPR119Q8TDV5 335 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 ADAMTS15Q8TE58 950 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 ZFP90Q8TF47 636 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 AENQ8WTP8 325 aaKnown RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 OR5P2Q8WZ92 322 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 ZNF524Q96C55 264 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 COQ8BQ96D53 544 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 CHMP6Q96FZ7 201 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 MRGPRX4Q96LA9 322 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 USB1Q9BQ65 265 aaKnown RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 MECRQ9BV79 373 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 CXorf36Q9H7Y0 433 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 BCO1Q9HAY6 547 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 EML4Q9HC35 981 aaKnown RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 ATAD3AQ9NVI7 634 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 GIMAP2Q9UG22 337 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 LGALS13Q9UHV8 139 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 FAF1Q9UNN5 650 aaPredicted RBP10.09□□□□□ -0.79
VPS28-214ENST00000531032 LAMP3Q9UQV4 416 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 CARD8Q9Y2G2 431 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 RNF115Q9Y4L5 304 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 KCNE3Q9Y6H6 103 aa10.09□□□□□ -0.79
VPS28-214ENST00000531032 PEX11AO75192 247 aa10.08□□□□□ -0.8
VPS28-214ENST00000531032 LYPLA1O75608 230 aaPredicted RBP10.08□□□□□ -0.8
VPS28-214ENST00000531032 C6orf47O95873 294 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms