RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR6C70A6NIJ9 312 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 RPS18P62269 152 aaKnown RBP19.47■□□□□ 0.71
VPS28-212ENST00000530836 IL1RL1Q01638 556 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 KEAP1Q14145 624 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 EFR3AQ14156 821 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 ANKRD34AQ69YU3 496 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 GALNT5Q7Z7M9 940 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 OR9Q2Q8NGE9 314 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 CNOT9Q92600 299 aaKnown RBP19.47■□□□□ 0.71
VPS28-212ENST00000530836 TRIM2Q9C040 744 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 EXOSC3Q9NQT5 275 aaKnown RBP19.47■□□□□ 0.71
VPS28-212ENST00000530836 TNFAIP8O95379 198 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 UGT2B15P54855 530 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 TMPRSS3P57727 454 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 COX10Q12887 443 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 NPRL3Q12980 569 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 SSPNQ14714 243 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 FAM69BQ5VUD6 431 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 RRM2BQ7LG56 351 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 TSPYL5Q86VY4 417 aaPredicted RBP19.46■□□□□ 0.71
VPS28-212ENST00000530836 C8orf59Q8N0T1 100 aaPredicted RBP19.46■□□□□ 0.71
VPS28-212ENST00000530836 LSMEM1Q8N8F7 131 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 SETD9Q8NE22 299 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 M1APQ8TC57 530 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 LMF1Q96S06 567 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 RIBC2Q9H4K1 309 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 KRCC1Q9NPI7 259 aaPredicted RBP19.46■□□□□ 0.71
VPS28-212ENST00000530836 HS3ST3B1Q9Y662 390 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 HSPE1-MOB4S4R3N1 261 aa19.46■□□□□ 0.71
VPS28-212ENST00000530836 CDC14CA4D256 554 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 ZNF891A8MT65 544 aaPredicted RBP19.45■□□□□ 0.7
VPS28-212ENST00000530836 K7ENP7 123 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 MITFO75030 526 aaPredicted RBP19.45■□□□□ 0.7
VPS28-212ENST00000530836 GASTP01350 101 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 LYNP07948 512 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 GNAO1P09471 354 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 GKN3PP0CG01 181 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 CYP4B1P13584 511 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 SEC23BQ15437 767 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 OR1Q1Q15612 314 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 CRTC2Q53ET0 693 aaPredicted RBP19.45■□□□□ 0.7
VPS28-212ENST00000530836 PLAG1Q6DJT9 500 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 INO80CQ6PI98 192 aaPredicted RBP19.45■□□□□ 0.7
VPS28-212ENST00000530836 CD300LDQ6UXZ3 194 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 GDF7Q7Z4P5 450 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 OR4K5Q8NGD3 323 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 ELP5Q8TE02 316 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 ACOT11Q8WXI4 607 aaPredicted RBP19.45■□□□□ 0.7
VPS28-212ENST00000530836 IMMP1LQ96LU5 166 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 CPNE5Q9HCH3 593 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 CTPS2Q9NRF8 586 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 NPFFR2Q9Y5X5 522 aa19.45■□□□□ 0.7
VPS28-212ENST00000530836 BCKDKO14874 412 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 NKX2-8O15522 239 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 UBL4AP11441 157 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 COX6A1P12074 109 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 TMED10P49755 219 aaKnown RBP19.44■□□□□ 0.7
VPS28-212ENST00000530836 TPD52P55327 224 aaPredicted RBP19.44■□□□□ 0.7
VPS28-212ENST00000530836 ESRRGP62508 458 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 HOXC5Q00444 222 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 PLAURQ03405 335 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 FNDC7Q5VTL7 733 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 NDUFAF7Q7L592 441 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 RNF113BQ8IZP6 322 aaKnown RBP19.44■□□□□ 0.7
VPS28-212ENST00000530836 SLC15A4Q8N697 577 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 FAM71CQ8NEG0 241 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 MUS81Q96NY9 551 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 APOL4Q9BPW4 351 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 NIPSNAP1Q9BPW8 284 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 DEFB126Q9BYW3 111 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 MMP25Q9NPA2 562 aa19.44■□□□□ 0.7
VPS28-212ENST00000530836 A0A087WUU8 490 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 ALG1L2C9J202 215 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PRKNO60260 465 aaPredicted RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 PPM1BO75688 479 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 UBTFL6P0CB48 400 aaPredicted RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 ICAM2P13598 275 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PRG2P13727 222 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 GSTM3P21266 225 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 FUT4P22083 530 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 HTR2AP28223 471 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 RYKP34925 604 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 ACAA2P42765 397 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 BTBD16Q32M84 506 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 C1orf94Q6P1W5 598 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PGBD2Q6P3X8 592 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 ZNF730Q6ZMV8 503 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 THAP5Q7Z6K1 395 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PRR22Q8IZ63 422 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 SLC22A8Q8TCC7 542 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 SNRNP27Q8WVK2 155 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 MESP1Q9BRJ9 268 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 PRR14Q9BWN1 585 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 YTHDF1Q9BYJ9 559 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 UCK2Q9BZX2 261 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 MYOTQ9UBF9 498 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 SCOCQ9UIL1 159 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 NDRG4Q9ULP0 352 aaKnown RBP19.43■□□□□ 0.7
VPS28-212ENST00000530836 SLC7A7Q9UM01 511 aa19.43■□□□□ 0.7
VPS28-212ENST00000530836 DSPP15924 2871 aaKnown RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms