RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ZGLP1P0C6A0 271 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 ADH7P40394 386 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 ST13P50502 369 aaKnown RBP19.05■□□□□ 0.64
VPS28-209ENST00000528142 DCAF7P61962 342 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 SNAPC1Q16533 368 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 NDUFAF6Q330K2 333 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 SYT14P1Q58G82 188 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 MEDAGQ5VYS4 303 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 PLAG1Q6DJT9 500 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 TCEAL6Q6IPX3 200 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 LANCL3Q6ZV70 420 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 OR1N1Q8NGS0 311 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 OR4Q3Q8NH05 313 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 WDR36Q8NI36 951 aaKnown RBP19.05■□□□□ 0.64
VPS28-209ENST00000528142 GRHL3Q8TE85 626 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 TCEAL3Q969E4 200 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 HS6ST2Q96MM7 605 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 GFM1Q96RP9 751 aaKnown RBP19.05■□□□□ 0.64
VPS28-209ENST00000528142 UBQLN4Q9NRR5 601 aa19.05■□□□□ 0.64
VPS28-209ENST00000528142 RPL36Q9Y3U8 105 aaKnown RBP19.05■□□□□ 0.64
VPS28-209ENST00000528142 C2orf92A0A1B0GVN3 265 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 UNC119BA6NIH7 251 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 EFCAB7A8K855 629 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 IFI30P13284 250 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 CCNA2P20248 432 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 CTBP2P56545 445 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 FOXL2P58012 376 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 CTF1Q16619 201 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 CLEC12AQ5QGZ9 265 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 LINC00114Q6XXX2 140 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 SHISA6Q6ZSJ9 500 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 TMPRSS11FQ6ZWK6 438 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 FAM71CQ8NEG0 241 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 TMEM163Q8TC26 289 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 RNF217Q8TC41 542 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 DPH1Q9BZG8 443 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 ATP13A2Q9NQ11 1180 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 MEPEQ9NQ76 525 aaPredicted RBP19.04■□□□□ 0.64
VPS28-209ENST00000528142 TBC1D23Q9NUY8 699 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 OCIAD1Q9NX40 245 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 SLC35A3Q9Y2D2 325 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 MED31Q9Y3C7 131 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 TO15178 435 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 GPR143P51810 404 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 DCDP81605 110 aaKnown RBP19.04■□□□□ 0.64
VPS28-209ENST00000528142 ZNF91Q05481 1191 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 BRIX1Q8TDN6 353 aaKnown RBP19.04■□□□□ 0.64
VPS28-209ENST00000528142 LRR1Q96L50 414 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 ZNF582Q96NG8 517 aaPredicted RBP19.04■□□□□ 0.64
VPS28-209ENST00000528142 PHOX2BQ99453 314 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 DCUN1D5Q9BTE7 237 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 ARRDC1-AS1Q9H2J1 176 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 APMAPQ9HDC9 416 aa19.04■□□□□ 0.64
VPS28-209ENST00000528142 SPEGQ15772 3267 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 D6RAR5 112 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 M0R082 166 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 TNFRSF10AO00220 468 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 RFPL3O75679 317 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 GABARAPO95166 117 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 UTS2O95399 124 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 ADORA3P0DMS8 318 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 DBTP11182 482 aaKnown RBP19.03■□□□□ 0.64
VPS28-209ENST00000528142 RBM34P42696 430 aaKnown RBP19.03■□□□□ 0.64
VPS28-209ENST00000528142 FXYD6P3P58550 94 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 ROR2Q01974 943 aaKnown RBP19.03■□□□□ 0.64
VPS28-209ENST00000528142 OCA2Q04671 838 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 NFATC3Q12968 1075 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 PHF19Q5T6S3 580 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 SLC30A6Q6NXT4 461 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 KIRREL2Q6UWL6 708 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 PPP1R3BQ86XI6 285 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 C9orf43Q8TAL5 461 aaPredicted RBP19.03■□□□□ 0.64
VPS28-209ENST00000528142 BPIFA2Q96DR5 249 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 CRELD1Q96HD1 420 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 SLC38A2Q96QD8 506 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 GAL3ST4Q96RP7 486 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 MRTO4Q9UKD2 239 aaKnown RBP19.03■□□□□ 0.64
VPS28-209ENST00000528142 TMEM5Q9Y2B1 443 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 FER1L5A0AVI2 2057 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 SEC16AO15027 2179 aa19.03■□□□□ 0.64
VPS28-209ENST00000528142 PTHP01270 115 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 HBQ1P09105 142 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 TGFBR2P37173 567 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 AQP6Q13520 282 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 NCF4Q15080 339 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 CD226Q15762 336 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 PGGHGQ32M88 737 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 ALG10BQ5I7T1 473 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 ULK3Q6PHR2 472 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 APOOLQ6UXV4 268 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 PRR23CQ6ZRP0 262 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 OVCH1Q7RTY7 1134 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 ZNF440Q8IYI8 595 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 ZNF441Q8N8Z8 693 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 ZNF527Q8NB42 609 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 SAMD8Q96LT4 415 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 BCL7BQ9BQE9 202 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 PRRG3Q9BZD7 231 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 NRSN2Q9GZP1 204 aa19.02■□□□□ 0.64
VPS28-209ENST00000528142 WWTR1Q9GZV5 400 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms