RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 ZNF607Q96SK3 696 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 CGREF1Q99674 301 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 TREX2Q9BQ50 279 aaPredicted RBP4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 ECSITQ9BQ95 431 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 CPPED1Q9BRF8 314 aaPredicted RBP4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 TTYH2Q9BSA4 534 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 SPATA9Q9BWV2 254 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 PRRG4Q9BZD6 226 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 RTN4RQ9BZR6 473 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 LAT2Q9GZY6 243 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 SAP130Q9H0E3 1048 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 SLC38A1Q9H2H9 487 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 RUBCNLQ9H714 662 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 CALHM2Q9HA72 323 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 CHST11Q9NPF2 352 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 EXOSC3Q9NQT5 275 aaKnown RBP4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 SLC6A13Q9NSD5 602 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 MED17Q9NVC6 651 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 KLHL28Q9NXS3 571 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 VAPAQ9P0L0 249 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 ARMCX1Q9P291 453 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 MCTS1Q9ULC4 181 aaKnown RBP4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 ZNF443Q9Y2A4 671 aaPredicted RBP4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 AP3M1Q9Y2T2 418 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 L3MBTL1Q9Y468 752 aa4.89□□□□□ -1.63
HMGB1P40-201ENST00000525121 BOD1L1Q8NFC6 3051 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 CFAP46Q8IYW2 2715 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 LOC100653049A0A140TA62 436 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 CFAP73A6NFT4 308 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 WIPF3A6NGB9 483 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 SLC22A20A6NK97 555 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 FAM90A27PA6NNH2 459 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 CLCA1A8K7I4 914 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 C17orf51A8MQB3 221 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 PRSS44E7EML9 344 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 NDUFAB1O14561 156 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 EIF1AYO14602 144 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 DVL2O14641 736 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ADAM10O14672 748 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 SNX3O60493 162 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 KRT34O76011 436 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 PGM3O95394 542 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ZIC2O95409 532 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 CLDN14O95500 239 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 EPPINO95925 133 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 PLGP00747 810 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 IFNA14P01570 189 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 LINGO3P0C6S8 592 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 PABPC4LP0CB38 370 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 TMIGD3P0DMS9 266 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 GLI4P10075 376 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ARAFP10398 606 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 BMP2P12643 396 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ETS2P15036 469 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ZNF708P17019 499 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 GPX2P18283 190 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 DRD4P21917 467 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RPS4Y1P22090 263 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 FKBP2P26885 142 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RYKP34925 604 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 TIMP3P35625 211 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 APOBEC1P41238 236 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 EIF1AXP47813 144 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 STARP49675 285 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 LHX2P50458 406 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MVDP53602 400 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 GYS2P54840 703 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 NUP107P57740 925 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MTPNP58546 118 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 B3GALT5-AS1P59052 145 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RAC1P63000 192 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ADORA2A-AS1P86434 159 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RBBP4Q09028 425 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MERTKQ12866 999 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 FOXF1Q12946 379 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ART3Q13508 389 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 SCARB2Q14108 478 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 NDUFAF6Q330K2 333 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 SLC25A35Q3KQZ1 300 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RUNDC3AQ59EK9 446 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 EMC4Q5J8M3 183 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ZNF311Q5JNZ3 666 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 RPS26P11Q5JNZ5 115 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 DCST1Q5T197 706 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MRPL2Q5T653 305 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 GKAP1Q5VSY0 366 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 NSUN5P2Q63ZY6 315 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 HBMQ6B0K9 141 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ERICH5Q6P6B1 374 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 POMZP3Q6PJE2 187 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 CBLN3Q6UW01 205 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ESPNLQ6ZVH7 1005 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 OLIG3Q7RTU3 272 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ZNF550Q7Z398 422 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 GRINAQ7Z429 371 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 HMGN2P46Q86SG4 172 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MTDHQ86UE4 582 aaKnown RBP4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 MCEMP1Q8IX19 187 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 LILRA2Q8N149 483 aa4.88□□□□□ -1.63
HMGB1P40-201ENST00000525121 ANKS4BQ8N8V4 417 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms