RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NKX2-4Q9H2Z4 354 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 ATG4BQ9Y4P1 393 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 KLK4Q9Y5K2 254 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SNX11Q9Y5W9 270 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CACNG2Q9Y698 323 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 TMX2-CTNND1H3BSU7 103 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 GABRPO00591 440 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 ARPC1BO15143 372 aaKnown RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 DUX1O43812 170 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 APOC1P02654 83 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CPMP14384 443 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 EPHA2P29317 976 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 ILKQ13418 452 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 BAIAP2L2Q6UXY1 529 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 FAM83HQ6ZRV2 1179 aaPredicted RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 TOR1AIP2Q8NFQ8 470 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 TM4SF18Q96CE8 201 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 PGAM5Q96HS1 289 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SAMD11Q96NU1 681 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 RANGRFQ9HD47 186 aaPredicted RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 VDAC3Q9Y277 283 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 ENTPD2Q9Y5L3 495 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 NRAPQ86VF7 1730 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 PHIPQ8WWQ0 1821 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 PRSS38A1L453 326 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 VSTM2BA6NLU5 285 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 H0YGG7 62 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 IDUAP35475 653 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 SLC1A3P43003 542 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 GLP1RP43220 463 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ARF3P61204 181 aaPredicted RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 TRA2BP62995 288 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 OR5M10Q6IEU7 315 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 SLC18B1Q6NT16 456 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 MEPCEQ7L2J0 689 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 DIO2Q92813 273 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TANKQ92844 425 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ZC3H10Q96K80 434 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 COQ10AQ96MF6 247 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 OR51J1Q9H342 316 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 MCCC2Q9HCC0 563 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 KLHL21Q9UJP4 597 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 DKKL1Q9UK85 242 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 CA14Q9ULX7 337 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ZNF443Q9Y2A4 671 aaPredicted RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 HMX3A6NHT5 357 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 PLPP1O14494 284 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ELAVL4P26378 380 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 PBX2P40425 430 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 POU3F4P49335 361 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 PLGLB1Q02325 96 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 SNTA1Q13424 505 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ELOAQ14241 798 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 LRIF1Q5T3J3 769 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 CFAP77Q6ZQR2 320 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 MCATQ8IVS2 390 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 SLC7A13Q8TCU3 470 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 NEURL3Q96EH8 262 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TOX2Q96NM4 488 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TXNL4BQ9NX01 149 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 PCDHGA6Q9Y5G7 932 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ECM29Q5VYK3 1845 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TFP02787 698 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 OPN1LWP04000 364 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 JUNBP17275 347 aaPredicted RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 ITGB8P26012 769 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 UQCRC1P31930 480 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TGFBR1P36897 503 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 HERV-K104P61576 105 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 HNRNPKP61978 463 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP53-209ENST00000514665 TANGO2Q6ICL3 276 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TMEM205Q6UW68 189 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 ZNF565Q8N9K5 539 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 SLC16A11Q8NCK7 471 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 CCDC54Q8NEL0 328 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 SHDQ96IW2 340 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 LPAR4Q99677 370 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 URM1Q9BTM9 101 aaKnown RBP11.86□□□□□ -0.51
USP53-209ENST00000514665 TMEM168Q9H0V1 697 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 CPNE7Q9UBL6 633 aa11.86□□□□□ -0.51
USP53-209ENST00000514665 TP53I11O14683 189 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 F13BP05160 661 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 IGFBP1P08833 259 aaPredicted RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 F3P13726 295 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 RABIFP47224 123 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 KCNJ5P48544 419 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 WDR45BQ5MNZ6 344 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 ELP2Q6IA86 826 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 FAM71E1Q6IPT2 247 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 ZNF322Q6U7Q0 402 aaPredicted RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 GPR148Q8TDV2 347 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 BCL7CQ8WUZ0 217 aaPredicted RBP11.85□□□□□ -0.51
USP53-209ENST00000514665 LINC01599Q8WXQ3 324 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 KLHL15Q96M94 604 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 AMDHD1Q96NU7 426 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 PRSS16Q9NQE7 514 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 SLC35A3Q9Y2D2 325 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 DOCK2Q92608 1830 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 A0A0J9YY10 115 aa11.85□□□□□ -0.51
USP53-209ENST00000514665 NPIPA2E9PIF3 369 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms