RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 BRIX1Q8TDN6 353 aaKnown RBP7.71□□□□□ -1.18
RNF4-220ENST00000513578 RAB2BQ8WUD1 216 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 DNAJA4Q8WW22 397 aaPredicted RBP7.71□□□□□ -1.18
RNF4-220ENST00000513578 TMEM239Q8WW34 195 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 RORBQ92753 470 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 ISOC1Q96CN7 298 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 COPS4Q9BT78 406 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 CDCA4Q9BXL8 241 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 SLC7A5P2Q9GIP4 190 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 RACGAP1Q9H0H5 632 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 NXF5Q9H1B4 397 aaKnown RBP7.71□□□□□ -1.18
RNF4-220ENST00000513578 WDR54Q9H977 334 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 GPN2Q9H9Y4 310 aaPredicted RBP7.71□□□□□ -1.18
RNF4-220ENST00000513578 C12orf10Q9HB07 376 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 FBXO8Q9NRD0 319 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 CTPS2Q9NRF8 586 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 COPS7AQ9UBW8 275 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 AASSQ9UDR5 926 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 MKL2Q9ULH7 1088 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 ICAM5Q9UMF0 924 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 NTNG1Q9Y2I2 539 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 CDH10Q9Y6N8 788 aa7.71□□□□□ -1.18
RNF4-220ENST00000513578 TPRP12270 2363 aaKnown RBP7.71□□□□□ -1.18
RNF4-220ENST00000513578 GPR179Q6PRD1 2367 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 A0A1B0GWA3 101 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CCDC160A6NGH7 325 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SAGE2PA6NJ88 616 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SNTNA6NMZ2 147 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 KDM4EB2RXH2 506 aaPredicted RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 B4E171 279 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 ALOX12BO75342 701 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 BCAS1O75363 584 aaPredicted RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 SOX14O95416 240 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CSTAP01040 98 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 NAGAP17050 411 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 POU1F1P28069 291 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CCKBRP32239 447 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CSTF2P33240 577 aaKnown RBP eCLIP7.7□□□□□ -1.18
RNF4-220ENST00000513578 GRK5P34947 590 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 TSPAN7P41732 249 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 LSM11P83369 360 aaKnown RBP eCLIP7.7□□□□□ -1.18
RNF4-220ENST00000513578 HOXC5Q00444 222 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 PIGFQ07326 219 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 LCE2DQ5TA82 110 aaPredicted RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 HLA-DQA1Q5Y7H0 255 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 ACSM5Q6NUN0 579 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 MRPL14Q6P1L8 145 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 ZC3H14Q6PJT7 736 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 TMEM205Q6UW68 189 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 WDR88Q6ZMY6 472 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 ZNF620Q6ZNG0 422 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 AHSA2Q719I0 299 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLC29A4Q7RTT9 530 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 ANKRD37Q7Z713 158 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLCO6A1Q86UG4 719 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 LAPTM4BQ86VI4 370 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 C9orf40Q8IXQ3 194 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CDK20Q8IZL9 346 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLC34A3Q8N130 599 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 GALNT15Q8N3T1 639 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 ZNF321PQ8N8H1 164 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLC38A9Q8NBW4 561 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 AGBL5Q8NDL9 886 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 B3GNT7Q8NFL0 401 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 OR8D4Q8NGM9 314 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 OR4C3Q8NH37 302 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 NUBPLQ8TB37 319 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 TMEM163Q8TC26 289 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 TMEM255BQ8WV15 326 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 C12orf43Q96C57 262 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 NMD3Q96D46 503 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 CLIP3Q96DZ5 547 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 YIPF6Q96EC8 236 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 FAM46AQ96IP4 442 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLC38A2Q96QD8 506 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CTRCQ99895 268 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 TEX12Q9BXU0 123 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 SLC19A3Q9BZV2 496 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 OR8D2Q9GZM6 311 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CCDC90BQ9GZT6 254 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 WWTR1Q9GZV5 400 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 LAT2Q9GZY6 243 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 FLRT3Q9NZU0 649 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 CTSFQ9UBX1 484 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 NXT1Q9UKK6 140 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 BAIAP2Q9UQB8 552 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 MED31Q9Y3C7 131 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 RPL36Q9Y3U8 105 aaKnown RBP7.7□□□□□ -1.18
RNF4-220ENST00000513578 CHD6Q8TD26 2715 aa7.7□□□□□ -1.18
RNF4-220ENST00000513578 KMT2BQ9UMN6 2715 aaPredicted RBP7.69□□□□□ -1.18
RNF4-220ENST00000513578 A0A087WUJ7 227 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 UNC119BA6NIH7 251 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 A8MUA0 341 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 IDSB3KWA1 339 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 ALG1L2C9J202 215 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 H3BMQ9 156 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 TMX2-CTNND1H3BSU7 103 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 SCDO00767 359 aa7.69□□□□□ -1.18
RNF4-220ENST00000513578 EIF4E2O60573 245 aaKnown RBP7.69□□□□□ -1.18
RNF4-220ENST00000513578 NOL3O60936 208 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms