RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CTSFQ9UBX1 484 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 NUP50Q9UKX7 468 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 TBC1D24Q9ULP9 559 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 MGAT4BQ9UQ53 548 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 ASPMQ8IZT6 3477 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 IGF2RP11717 2491 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 INMT-MINDY4F8WBC2 141 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 C7P10643 843 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 FBLP22087 321 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 CFL1P23528 166 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 ATP12AP54707 1039 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 CSRP2Q16527 193 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 PROX2Q3B8N5 592 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 YIF1BQ5BJH7 314 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM52Q8NDY8 209 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 OR51Q1Q8NH59 317 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 LILRB1Q8NHL6 650 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 RBM18Q96H35 190 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 ZFP3Q96NJ6 502 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 GAL3ST4Q96RP7 486 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 C12orf57Q99622 126 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 MESP1Q9BRJ9 268 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 POLR2J2Q9GZM3 115 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 OR8D2Q9GZM6 311 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 VNN3Q9NY84 501 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 ZIM2Q9NZV7 527 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 LOXL2Q9Y4K0 774 aa8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM184BQ9Y519 407 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-209ENST00000509277 C10orf142B7Z368 130 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC22A2O15244 555 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CREG1O75629 220 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 RFPL3O75679 317 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 NCR1O76036 304 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 RGS11O94810 467 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SIX6O95475 246 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 NPPAP01160 153 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 UMPSP11172 480 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 JUNBP17275 347 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ITGA2P17301 1181 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 UGT2B15P54855 530 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 LIM2P55344 173 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 OC90Q02509 493 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 LASP1Q14847 261 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 EXOSC7Q15024 291 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PLA2G2CQ5R387 149 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 FAM111BQ6SJ93 734 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SHFQ7M4L6 423 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 LAPTM4BQ86VI4 370 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 Q8N402 240 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 NLGN4YQ8NFZ3 816 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 OR5K1Q8NHB7 308 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 MAL2Q969L2 176 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 C8orf44Q96CB5 159 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF556Q9HAH1 456 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PRDM9Q9NQV7 894 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PCDHGA9Q9Y5G4 932 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PCDHA9Q9Y5H5 950 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 B3GALT1Q9Y5Z6 326 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 EPHA4P54764 986 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 HBA1P69905 142 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ACY1Q03154 408 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CRYZQ08257 329 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 COX10Q12887 443 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ELOAQ14241 798 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM35AQ53FP2 167 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF691Q5VV52 312 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC6A19Q695T7 634 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TMEM88Q6PEY1 159 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ALKAL2Q6UX46 152 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PTCHD4Q6ZW05 846 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 USP51Q70EK9 711 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CHCHD4Q8N4Q1 142 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 DNAJC22Q8N4W6 341 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SYT14Q8NB59 555 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TSLPQ969D9 159 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SLC35A5Q9BS91 424 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 STRADBQ9C0K7 418 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF385DQ9H6B1 395 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PRTFDC1Q9NRG1 225 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PILRAQ9UKJ1 303 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CDV3Q9UKY7 258 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SESN1Q9Y6P5 492 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TCRBV16S1A1N1A0A5B0 115 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TNFSF14O43557 240 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 SRPX2O60687 465 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ALOX12BO75342 701 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 IL6P05231 212 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 ZNF28P17035 718 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CTRB1P17538 263 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PCMT1P22061 227 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PSMA1P25786 263 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 NUP62P37198 522 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 RPS19P39019 145 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 MC3RP41968 323 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 AKR1C2P52895 323 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 AKR1C1Q04828 323 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 PCDH1Q08174 1060 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 CDC20Q12834 499 aa8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 TARDBPQ13148 414 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMCH1-209ENST00000509277 FCN2Q15485 313 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms