RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 BCKDHAP12694 445 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 PAX1P15863 534 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 CRHR1P34998 444 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 FRKP42685 505 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 SERPINB4P48594 390 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 TP53BP2Q13625 1128 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 PDE7AQ13946 482 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 TMEM176BQ3YBM2 270 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 ADAM5Q6NVV9 412 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 CDC73Q6P1J9 531 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 FCRLAQ7L513 359 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 LSRQ86X29 649 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 MISPQ8IVT2 679 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 GABRG1Q8N1C3 465 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 TMCO5AQ8N6Q1 288 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 BANPQ8N9N5 519 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 STEAP2Q8NFT2 490 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 AGR3Q8TD06 166 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 EPS8L3Q8TE67 593 aaKnown RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 UBLCP1Q8WVY7 318 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 GTPBP3Q969Y2 492 aaKnown RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 ZNF775Q96BV0 537 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 ZNF524Q96C55 264 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 REPIN1Q9BWE0 567 aaKnown RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 BTBD2Q9BX70 525 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 IQCGQ9H095 443 aaKnown RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 COQ10BQ9H8M1 238 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 ANKZF1Q9H8Y5 726 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 ACSS1Q9NUB1 689 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 NTMQ9P121 344 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 KLHL13Q9P2N7 655 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 MAGED1Q9Y5V3 778 aaPredicted RBP11.24□□□□□ -0.61
SKA1-205ENST00000494518 KCNE3Q9Y6H6 103 aa11.24□□□□□ -0.61
SKA1-205ENST00000494518 YLPM1P49750 1951 aaKnown RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 A0A1W2PQD3 144 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 ZNF195O14628 629 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 PIP5K1BO14986 540 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 TBX19O60806 448 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 NDUFS7O75251 213 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 LAMP1P11279 417 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 NEFHP12036 1026 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 PTNP21246 168 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 ATP6V1C1P21283 382 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 ENPP1P22413 925 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 EDNRAP25101 427 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 ACVR1BP36896 505 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 HPCAL1P37235 193 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 CCT5P48643 541 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 CCR4P51679 360 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 NAA20P61599 178 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 BSPH1Q075Z2 132 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 PCLAFQ15004 111 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 STK11Q15831 433 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 EXOSC6Q5RKV6 272 aaKnown RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 NCMAPQ5T1S8 102 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.23□□□□□ -0.61
SKA1-205ENST00000494518 SFRP5Q5T4F7 317 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 KANK2Q63ZY3 851 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 GTF2IRD2BQ6EKJ0 949 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 CXXC5Q7LFL8 322 aaKnown RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 OLIG3Q7RTU3 272 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 GTF2IRD2Q86UP8 949 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 ZFP90Q8TF47 636 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 TWIST2Q8WVJ9 160 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 KISS1RQ969F8 398 aaPredicted RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 FBXW5Q969U6 566 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 CPNE4Q96A23 557 aaPredicted RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 ZNF764Q96H86 408 aaPredicted RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 METTL2AQ96IZ6 378 aaKnown RBP11.23□□□□□ -0.61
SKA1-205ENST00000494518 C1orf50Q9BV19 199 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 PRSS50Q9UI38 385 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 DNAJC15Q9Y5T4 150 aa11.23□□□□□ -0.61
SKA1-205ENST00000494518 A0A1W2PP18 115 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 GTPBP1O00178 669 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 SCAMP2O15127 329 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 CRLF1O75462 422 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 LYZL6O75951 148 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 SOX30O94993 753 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 C6orf47O95873 294 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 CHEK2O96017 543 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 PABPC4LP0CB38 370 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 KRT4P19013 534 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 EIF1P41567 113 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 ASMTP46597 345 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 DMTNQ08495 405 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 PTGR1Q14914 329 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 RNPS1Q15287 305 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 SPDYE7PQ495Y7 208 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 DCST2Q5T1A1 773 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 ZCCHC12Q6PEW1 402 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 BHLHA15Q7RTS1 189 aaPredicted RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 ANKK1Q8NFD2 765 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 OR5AK3PQ8NH89 298 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 OR2W6PQ8NHA6 318 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 SMAP2Q8WU79 429 aaPredicted RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 DNAJA3Q96EY1 480 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 TRMT61AQ96FX7 289 aaKnown RBP11.22□□□□□ -0.61
SKA1-205ENST00000494518 OR10A4Q9H209 315 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 PIGUQ9H490 435 aa11.22□□□□□ -0.61
SKA1-205ENST00000494518 ESRP2Q9H6T0 727 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms