RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 HADHQ16836 314 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TRIM16LQ309B1 348 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IQCCQ4KMZ1 466 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CEP55Q53EZ4 464 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 HECTD3Q5T447 861 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LCE1FQ5T754 118 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ATAD3BQ5T9A4 648 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 UBE2UQ5VVX9 321 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PYHIN1Q6K0P9 492 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SLC30A6Q6NXT4 461 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CASC4Q6P4E1 433 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ZCCHC12Q6PEW1 402 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 C11orf88Q6PI97 169 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ZYG11AQ6WRX3 759 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CDHR3Q6ZTQ4 885 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COPS6Q7L5N1 327 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GALNTL5Q7Z4T8 443 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ADCK2Q7Z695 626 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ASPGQ86U10 573 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COMTD1Q86VU5 262 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC6Q86X45 466 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 VSIG1Q86XK7 387 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CLEC4FQ8N1N0 589 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 HDDC3Q8N4P3 179 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ARFGAP2Q8N6H7 521 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TCEANCQ8N8B7 351 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DNAAF3Q8N9W5 541 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 Q8NBF4 154 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 XXYLT1Q8NBI6 393 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 MINDY2Q8NBR6 621 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 OR6J1Q8NGC5 347 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 OR52N1Q8NH53 320 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LHFPL5Q8TAF8 219 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC20Q8TCA0 184 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DTD1Q8TEA8 209 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 AENQ8WTP8 325 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CHPT1Q8WUD6 406 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 FAM151AQ8WW52 585 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PIK3R3Q92569 461 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TAMM41Q96BW9 452 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PGAP3Q96FM1 320 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 VPS39Q96JC1 886 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 B3GALT6Q96L58 329 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 AK8Q96MA6 479 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF560Q96MR9 790 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC43Q96MW1 224 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 MUS81Q96NY9 551 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RAB3IPQ96QF0 476 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RANBP9Q96S59 729 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PSMB7Q99436 277 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CDCA3Q99618 268 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 C12orf57Q99622 126 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COPS4Q9BT78 406 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RAB11FIP5Q9BXF6 653 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TBC1D10AQ9BXI6 508 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC2Q9BYS8 371 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SLC2A11Q9BYW1 496 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GPR88Q9GZN0 384 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 NAPBQ9H115 298 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LHX5Q9H2C1 402 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RIMS4Q9H426 269 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 FN3KQ9H479 309 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DPEP3Q9H4B8 488 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC19Q9H756 370 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 Q9H8V8 135 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COG4Q9H9E3 785 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SPACA1Q9HBV2 294 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RPS10P5Q9NQ39 176 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LZTFL1Q9NQ48 299 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PRMT8Q9NR22 394 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DIABLOQ9NR28 239 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DDX19AQ9NUU7 478 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CYP39A1Q9NYL5 469 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ACTR3BQ9P1U1 418 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ELF5Q9UKW6 265 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PACSIN2Q9UNF0 486 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SNX7Q9UNH6 387 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ENTPD4Q9Y227 616 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 UTP11Q9Y3A2 253 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CHTOPQ9Y3Y2 248 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF175Q9Y473 711 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 WIPI2Q9Y4P8 454 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GMPPBQ9Y5P6 360 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SLC22A7Q9Y694 548 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COLEC10Q9Y6Z7 277 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 FBN1P35555 2871 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 F8P00451 2351 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COL12A1Q99715 3063 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LAMA5O15230 3695 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 NBEAL1Q6ZS30 2694 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 NOTCH3Q9UM47 2321 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 FN1P02751 2386 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 A0A087WWV3 80 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TRBV5-5A0A0J9YX44 114 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1W2PPM1 405 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1W2PPW3 197 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MEX3AA1L020 520 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 KRT87PA6NCN2 255 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CASTOR2A6NHX0 329 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms