RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	C16orf58	Q96GQ5	468 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	SGCZ	Q96LD1	299 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	STAC	Q99469	402 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	HOPX	Q9BPY8	73 aa	Predicted RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	ECSIT	Q9BQ95	431 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	ITPA	Q9BY32	194 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	MYLK2	Q9H1R3	596 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	PIGU	Q9H490	435 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	DLL4	Q9NR61	685 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	GIN1	Q9NXP7	522 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	NDE1	Q9NXR1	346 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	NTM	Q9P121	344 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	TAGLN3	Q9UI15	199 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	ZNF223	Q9UK11	482 aa	Predicted RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	CBLC	Q9ULV8	474 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	RPH3A	Q9Y2J0	694 aa	Predicted RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	AP3M1	Q9Y2T2	418 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	GPR55	Q9Y2T6	319 aa	Predicted RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	PCDHB14	Q9Y5E9	798 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	FAM215A	Q9Y5M1	114 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	CHD3	Q12873	2000 aa	Known RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	JMJD1C	Q15652	2540 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	TLN2	Q9Y4G6	2542 aa		7.96	□□□□□ -1.14
USP4-213	ENST00000488520	FN1	P02751	2386 aa	Known RBP	7.96	□□□□□ -1.14
USP4-213	ENST00000488520	PCNX3	Q9H6A9	2034 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	ACOT7	O00154	380 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	GMNN	O75496	209 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	AK1	P00568	194 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	OR12D1	P0DN82	309 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	NR2F1	P10589	423 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	UQCRC1	P31930	480 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	CDKN2C	P42773	168 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	MAGEA5	P43359	124 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	PNLIPRP2	P54317	469 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	KRT72	Q14CN4	511 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	NNAT	Q16517	81 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	GPAT3	Q53EU6	434 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	FBXW10	Q5XX13	1052 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	SLC22A10	Q63ZE4	541 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	SAXO2	Q658L1	398 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	REP15	Q6BDI9	236 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	MFSD12	Q6NUT3	480 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	B3GNT6	Q6ZMB0	384 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	TRPM8	Q7Z2W7	1104 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	RNF130	Q86XS8	419 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	CLEC4F	Q8N1N0	589 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	DPP10	Q8N608	796 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	PNPT1	Q8TCS8	783 aa	Known RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	ZFP90	Q8TF47	636 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	ADIPOR1	Q96A54	375 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	ROPN1L	Q96C74	230 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	LRRC58	Q96CX6	371 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	NEURL3	Q96EH8	262 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	OR7D2	Q96RA2	312 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	RASL10B	Q96S79	203 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	CGREF1	Q99674	301 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	LMF2	Q9BU23	707 aa	Known RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	BTBD2	Q9BX70	525 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	TTTY12	Q9BZ98	90 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	HOXD1	Q9GZZ0	328 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	PAIP1	Q9H074	479 aa	Known RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	NXF5	Q9H1B4	397 aa	Known RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	OR51I1	Q9H343	314 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	LDAH	Q9H6V9	325 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	EXO5	Q9H790	373 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	HHATL	Q9HCP6	504 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	SDHAF3	Q9NRP4	125 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	DUSP22	Q9NRW4	184 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	RASSF1	Q9NS23	344 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	SIRT3	Q9NTG7	399 aa	Predicted RBP	7.95	□□□□□ -1.14
USP4-213	ENST00000488520	CALML5	Q9NZT1	146 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	ACAD8	Q9UKU7	415 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	LIPT1	Q9Y234	373 aa		7.95	□□□□□ -1.14
USP4-213	ENST00000488520	DNHD1	Q96M86	4753 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	C15orf38-AP3S2	A0A0A6YYH1	394 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CCT8L1P	A6NM43	557 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520		H3BNH8	94 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	BCKDK	O14874	412 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	T	O15178	435 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	PPM1B	O75688	479 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ATP5H	O75947	161 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	OR6B1	O95007	311 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	NKX2-2	O95096	273 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CLPS	P04118	112 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CT45A8	P0DMV1	189 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CT45A9	P0DMV2	189 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ABCD3	P28288	659 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SOX3	P41225	446 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	DNASE1L1	P49184	302 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	NUDT2	P50583	147 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	RASSF2	P50749	326 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CASP9	P55211	416 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	DSTN	P60981	165 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	PSG6	Q00889	435 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	FADD	Q13158	208 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	TRMT5	Q32P41	509 aa	Known RBP	7.94	□□□□□ -1.14
USP4-213	ENST00000488520	RUNDC3A	Q59EK9	446 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CT45A2	Q5DJT8	189 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	7.94	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms