RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 EGFL7Q9UHF1 273 aa9.38□□□□□ -0.91
SKA1-204ENST00000488454 MAGEL2Q9UJ55 1249 aa9.38□□□□□ -0.91
SKA1-204ENST00000488454 DKKL1Q9UK85 242 aa9.38□□□□□ -0.91
SKA1-204ENST00000488454 PACSIN3Q9UKS6 424 aa9.38□□□□□ -0.91
SKA1-204ENST00000488454 USP22Q9UPT9 525 aa9.38□□□□□ -0.91
SKA1-204ENST00000488454 ZNF443Q9Y2A4 671 aaPredicted RBP9.38□□□□□ -0.91
SKA1-204ENST00000488454 IGLV3-32A0A0A0MS00 114 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 NPIPA5E9PKD4 350 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 SORBS2O94875 1100 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 GLSO94925 669 aaPredicted RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 MFN2O95140 757 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 BMP4P12644 408 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 RPS4Y1P22090 263 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 DPP4P27487 766 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 PGM1P36871 562 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 SLC6A8P48029 635 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 P2RX1P51575 399 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 CCR4P51679 360 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 ZNF41P51814 821 aaPredicted RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 SUMO3P55854 103 aaPredicted RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 DSCR4P56555 118 aaPredicted RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 PCBP3P57721 371 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 BNIP2Q12982 314 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 CBFBQ13951 182 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 GANABQ14697 944 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 HYAL4Q2M3T9 481 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 LRRC23Q53EV4 343 aaPredicted RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 MRPL2Q5T653 305 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 RNF220Q5VTB9 566 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 ZNF550Q7Z398 422 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 TMEM251Q8N6I4 163 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 SMYD1Q8NB12 490 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 FAM156AQ8NDB6 213 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 OR2M3Q8NG83 312 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 OR5W2Q8NH69 310 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 FAR1Q8WVX9 515 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 PROX1Q92786 737 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 NTNG2Q96CW9 530 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 SNRNP40Q96DI7 357 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 TAAR6Q96RI8 345 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 PINK1Q9BXM7 581 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 DEFB127Q9H1M4 99 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 LDAHQ9H6V9 325 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 EXO5Q9H790 373 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 EVA1AQ9H8M9 152 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 EXOSC3Q9NQT5 275 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 OLAHQ9NV23 265 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 RLIMQ9NVW2 624 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 QPCTLQ9NXS2 382 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 TAS2R10Q9NYW0 307 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 CD300AQ9UGN4 299 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 FBXL2Q9UKC9 423 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 BAG5Q9UL15 447 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 NPIPA1Q9UND3 350 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 C15orf41Q9Y2V0 281 aa9.37□□□□□ -0.91
SKA1-204ENST00000488454 TNRC6AQ8NDV7 1962 aaKnown RBP9.37□□□□□ -0.91
SKA1-204ENST00000488454 CPAMD8Q8IZJ3 1885 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 EPG5Q9HCE0 2579 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 A0A087WZY1 265 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CENPVL1A0A0U1RR11 272 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CDHR4A6H8M9 788 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 ANKUB1A6NFN9 424 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CFAP73A6NFT4 308 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 LRRC3CA6NJW4 275 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CLDN24A6NM45 220 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 GSC2O15499 205 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 SUV39H1O43463 412 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CDC40O60508 579 aaKnown RBP eCLIP9.36□□□□□ -0.91
SKA1-204ENST00000488454 PDE5AO76074 875 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 OPN1SWP03999 348 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 C8BP07358 591 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 LINGO3P0C6S8 592 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 RFPL3SP0C7P2 107 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 NCK1P16333 377 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 HK1P19367 917 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 GGT1P19440 569 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 PGCP20142 388 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 SRD5A2P31213 254 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 RYKP34925 604 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 MSX2P35548 267 aaPredicted RBP9.36□□□□□ -0.91
SKA1-204ENST00000488454 MAGEA5P43359 124 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 COPZ1P61923 177 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 EEF1A1P68104 462 aaKnown RBP9.36□□□□□ -0.91
SKA1-204ENST00000488454 ZNF117Q03924 483 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 DMTNQ08495 405 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CEACAM7Q14002 265 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 ELOAQ14241 798 aaKnown RBP9.36□□□□□ -0.91
SKA1-204ENST00000488454 NDUFAF6Q330K2 333 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 KRTCAP3Q53RY4 240 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CYBRD1Q53TN4 286 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 FNDC7Q5VTL7 733 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 DHRS4L2Q6PKH6 230 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 ZNF836Q6ZNA1 936 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 GRAMD2AQ8IUY3 354 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 ALDH16A1Q8IZ83 802 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CLIP4Q8N3C7 705 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 FADS6Q8N9I5 356 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 OR14L1PQ8NHC6 308 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 ZNF563Q8TA94 476 aa9.36□□□□□ -0.91
SKA1-204ENST00000488454 CPT1CQ8TCG5 803 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms