RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FGF17O60258 216 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 RASGRP1O95267 797 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 LYPD3O95274 346 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 DBIP07108 87 aaKnown RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 THBS1P07996 1170 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 SAGP10523 405 aaPredicted RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 PVRP15151 417 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 ALAS2P22557 587 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 MLLT3P42568 568 aaPredicted RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 RAB25P57735 213 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 FOXK2Q01167 660 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 FHL5Q5TD97 284 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 SAMD14Q8IZD0 417 aaPredicted RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 LILRB4Q8NHJ6 448 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 GRHL3Q8TE85 626 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 SLC22A18Q96BI1 424 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 GXYLT2A0PJZ3 443 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 YES1P07947 543 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 FAM157BP0CG42 384 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 GAAP10253 952 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 NID1P14543 1247 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 HLA-DMAP28067 261 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 SLC3A1Q07837 685 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 YIPF7Q8N8F6 280 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 CYB561A3Q8NBI2 242 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 DUSP18Q8NEJ0 188 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 KISS1RQ969F8 398 aaPredicted RBP16.64■□□□□ 0.25
VIM-206ENST00000487938 UPRTQ96BW1 309 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 BPIFA2Q96DR5 249 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 TEAD3Q99594 435 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 JAM3Q9BX67 310 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 HDHD2Q9H0R4 259 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 USP36Q9P275 1121 aaKnown RBP16.64■□□□□ 0.25
VIM-206ENST00000487938 FBXL4Q9UKA2 621 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 DOCK8Q8NF50 2099 aa16.64■□□□□ 0.25
VIM-206ENST00000487938 CDHR4A6H8M9 788 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 RFPL3O75679 317 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 CT62P0C5K7 136 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 NDUFS1P28331 727 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 NOS3P29474 1203 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 NTSR1P30989 418 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 GABRA3P34903 492 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 OR10A3P58181 314 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 E2F1Q01094 437 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 TMEM31Q5JXX7 168 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 ZAR1Q86SH2 424 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 LNX2Q8N448 690 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 GFM1Q96RP9 751 aaKnown RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 MAT2BQ9NZL9 334 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 PRR23D1E9PI22 279 aaPredicted RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 SLC19A2O60779 497 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 GYPBP06028 91 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 PRR23D2P0DMB1 279 aaPredicted RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 IL9P15248 144 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 RPS4Y1P22090 263 aaKnown RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 LBX1P52954 281 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 ADAM15Q13444 863 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 GALEQ14376 348 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 KIR2DS3Q14952 304 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 RPTNQ6XPR3 784 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 ASB18Q6ZVZ8 466 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 CDK20Q8IZL9 346 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 RNF113BQ8IZP6 322 aaKnown RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 ZNF614Q8N883 585 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 PATE1Q8WXA2 126 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 KCNJ15Q99712 375 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 KCNN2Q9H2S1 579 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 MEPEQ9NQ76 525 aaPredicted RBP16.63■□□□□ 0.25
VIM-206ENST00000487938 STARD5Q9NSY2 213 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 ADAM30Q9UKF2 790 aa16.63■□□□□ 0.25
VIM-206ENST00000487938 URADA6NGE7 173 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 H0YGG7 62 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 J3QLW9 94 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 LANCL1O43813 399 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ZNF19P17023 458 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 MTNR1BP49286 362 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ARF3P61204 181 aaPredicted RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 GPR18Q14330 331 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SF3A2Q15428 464 aaKnown RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 TRILQ7L0X0 811 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ABHD13Q7L211 337 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 FAM3CQ92520 227 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ZC3HAV1LQ96H79 300 aaKnown RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 BMFQ96LC9 184 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 NECTIN4Q96NY8 510 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SMAD5Q99717 465 aaKnown RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 TTTY10Q9BZA0 68 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 FN3KQ9H479 309 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 TRIM36Q9NQ86 728 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ACTR10Q9NZ32 417 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SIGLEC7Q9Y286 467 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 FAM86C2PA6NEL3 165 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 LINC01565O15544 149 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 RCBTB2O95199 551 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 EIF4EP06730 217 aaKnown RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 CFL1P23528 166 aaKnown RBP16.62■□□□□ 0.25
VIM-206ENST00000487938 BMP8BP34820 402 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 ACVR1BP36896 505 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 TNFRSF4P43489 277 aa16.62■□□□□ 0.25
VIM-206ENST00000487938 SHC2P98077 582 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms