RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 LCP2Q13094 533 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 TIMM23BQ5SRD1 257 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 CCNJQ5T5M9 372 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 ANKRD26P1Q6NSI1 321 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 RELL1Q8IUW5 271 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 CDRT4Q8N9R6 151 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 FBXO27Q8NI29 283 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 ZFP90Q8TF47 636 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 FAM168AQ92567 244 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 L3HYPDHQ96EM0 354 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 C16orf58Q96GQ5 468 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 DHRS9Q9BPW9 319 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 GSTO2Q9H4Y5 243 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 UBQLN4Q9NRR5 601 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 ICAM5Q9UMF0 924 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 CCL27Q9Y4X3 112 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 OR5H1A6NKK0 313 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 INHBAP08476 426 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 IMPDH1P20839 514 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 EIF1P41567 113 aaKnown RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 FRKP42685 505 aaPredicted RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 PKNOX1P55347 436 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 SLC7A5Q01650 507 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 KIAA0040Q15053 153 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 TMEM176BQ3YBM2 270 aaPredicted RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 FAM120AOSQ5T036 256 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 IKBIPQ70UQ0 350 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 MISPQ8IVT2 679 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 MUC15Q8N387 334 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF433Q8N7K0 673 aaPredicted RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 OR6Y1Q8NGX8 325 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 PROX1Q92786 737 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 REXO5Q96IC2 774 aaKnown RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 MS4A4EQ96PG1 132 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 CDC42EP4Q9H3Q1 356 aaKnown RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 TNFRSF12AQ9NP84 129 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 ACTL7BQ9Y614 415 aa13.52□□□□□ -0.25
MCF2L-228ENST00000487354 NUP214P35658 2090 aaPredicted RBP13.52□□□□□ -0.25
MCF2L-228ENST00000487354 A0A1W2PNR3 127 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 C9JVG2 144 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 ETV2O00321 342 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 CYTIPO60759 359 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 H6PDO95479 791 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 PRKCAP17252 672 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 GGT1P19440 569 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 USF1P22415 310 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 PHBP35232 272 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 SERPINB9P50453 376 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 PRKAA2P54646 552 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 NDUFAF6Q330K2 333 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 VPS26BQ4G0F5 336 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 SPDYAQ5MJ70 313 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 TEX35Q5T0J7 233 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 NOXRED1Q6NXP6 359 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 TRIM46Q7Z4K8 759 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 PIAS4Q8N2W9 510 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 SLC43A2Q8N370 569 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 NUP43Q8NFH3 380 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 FAM76AQ8TAV0 307 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF775Q96BV0 537 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 MSI2Q96DH6 328 aaKnown RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF764Q96H86 408 aaPredicted RBP13.51□□□□□ -0.25
MCF2L-228ENST00000487354 PRR14Q9BWN1 585 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 L2HGDHQ9H9P8 463 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 HHATLQ9HCP6 504 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 TIGARQ9NQ88 270 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 KLHL9Q9P2J3 617 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF180Q9UJW8 692 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 SLC25A15Q9Y619 301 aa13.51□□□□□ -0.25
MCF2L-228ENST00000487354 NPIPA5A0A0B4J1W7 369 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 ESPNB1AK53 854 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 NPIPA7E9PJI5 369 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 KIF2AO00139 706 aaPredicted RBP13.5□□□□□ -0.25
MCF2L-228ENST00000487354 SCDO00767 359 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 PDPK1O15530 556 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 NPIPA8P0DM63 369 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 CD40P25942 277 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 GCAP28676 217 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 LCN1P31025 176 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 PRKAG1P54619 331 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 RAC3P60763 192 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 LSM11P83369 360 aaKnown RBP eCLIP13.5□□□□□ -0.25
MCF2L-228ENST00000487354 RAB35Q15286 201 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 SLC25A53Q5H9E4 307 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF572Q7Z3I7 529 aaPredicted RBP13.5□□□□□ -0.25
MCF2L-228ENST00000487354 P2RY8Q86VZ1 359 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 MMGT1Q8N4V1 131 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 OR2W6PQ8NHA6 318 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 GPR119Q8TDV5 335 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 RADILQ96JH8 1075 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 ANKZF1Q9H8Y5 726 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 CHODLQ9H9P2 273 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 EML4Q9HC35 981 aaKnown RBP13.5□□□□□ -0.25
MCF2L-228ENST00000487354 PYCARDQ9ULZ3 195 aa13.5□□□□□ -0.25
MCF2L-228ENST00000487354 WBP11Q9Y2W2 641 aaKnown RBP13.5□□□□□ -0.25
MCF2L-228ENST00000487354 A0A1W2PR80 420 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 GJE1A6NN92 205 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF724A8MTY0 619 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 RAD51DO75771 328 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms