RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PLGLB1Q02325 96 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 PLAURQ03405 335 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 FOXO1Q12778 655 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 SKP2Q13309 424 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 NRF1Q16656 503 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 NADK2Q4G0N4 442 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 IFI44LQ53G44 452 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 SLC6A19Q695T7 634 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 ZNF550Q7Z398 422 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 CARM1Q86X55 608 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 AQP12AQ8IXF9 295 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 FAM86B1Q8N7N1 296 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 FADS6Q8N9I5 356 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 TOR1AIP2Q8NFQ8 470 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 OR2M3Q8NG83 312 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 OR5W2Q8NH69 310 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 VANGL1Q8TAA9 524 aaPredicted RBP11.15□□□□□ -0.62
SDC1-206ENST00000482879 POP5Q969H6 163 aaKnown RBP11.15□□□□□ -0.62
SDC1-206ENST00000482879 ARHGDIGQ99819 225 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 SLC25A18Q9H1K4 315 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 PTGES2Q9H7Z7 377 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 EVA1AQ9H8M9 152 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 EXOSC3Q9NQT5 275 aaKnown RBP11.15□□□□□ -0.62
SDC1-206ENST00000482879 FBXL2Q9UKC9 423 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 ICAM5Q9UMF0 924 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 SLC9A8Q9Y2E8 581 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 MPDZO75970 2070 aa11.15□□□□□ -0.63
SDC1-206ENST00000482879 ANKUB1A6NFN9 424 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LRRC3CA6NJW4 275 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 B4DXG7 233 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 CDC40O60508 579 aaKnown RBP eCLIP11.14□□□□□ -0.633e-6■■■□□ 17.2
SDC1-206ENST00000482879 CBR3O75828 277 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 RASAL1O95294 804 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 NUDT14O95848 222 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LINGO3P0C6S8 592 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 PRG2P13727 222 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 RFC3P40938 356 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 OR1E2P47887 323 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 SLC6A8P48029 635 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 SUMO3P55854 103 aaPredicted RBP11.14□□□□□ -0.63
SDC1-206ENST00000482879 HOXC5Q00444 222 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 CBFBQ13951 182 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LY6DQ14210 128 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LACC1Q8IV20 430 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 TEX19Q8NA77 164 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 ZFP62Q8NB50 900 aaPredicted RBP11.14□□□□□ -0.63
SDC1-206ENST00000482879 OR4D11Q8NGI4 311 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 OR6T1Q8NGN1 323 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 GPR119Q8TDV5 335 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 GEMIN6Q8WXD5 167 aaKnown RBP11.14□□□□□ -0.63
SDC1-206ENST00000482879 SLC39A7Q92504 469 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 SLC35B4Q969S0 331 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 PNPLA2Q96AD5 504 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 ARSGQ96EG1 525 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 WBP1Q96G27 269 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 SEPHS2Q99611 448 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 KLHDC3Q9BQ90 382 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 WFDC6Q9BQY6 131 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 UGT2B28Q9BY64 529 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 TTTY12Q9BZ98 90 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LUZP4Q9P127 313 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 ANAPC2Q9UJX6 822 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 LHX6Q9UPM6 363 aa11.14□□□□□ -0.63
SDC1-206ENST00000482879 TCRBV3S1A0A5B6 114 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 FAM166BA8MTA8 275 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 FAM47E-STBD1D6RA91 191 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 AP3D1O14617 1153 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 ADAM11O75078 769 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 GLSO94925 669 aaPredicted RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 RFPL3SP0C7P2 107 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 UMPSP11172 480 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 PGCP20142 388 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 DPP4P27487 766 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 ACAA2P42765 397 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 ZNF136P52737 540 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 PPIAP62937 165 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 PMP22Q01453 160 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 KCNC4Q03721 635 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 CHRNB3Q05901 458 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 GTF3C1Q12789 2109 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 EPS8Q12929 822 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 CCNIQ14094 377 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 KPNB1Q14974 876 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 TOMM20Q15388 145 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 FAM98BQ52LJ0 330 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 RPUSD3Q6P087 351 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 PCSK4Q6UW60 755 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 RANBP3LQ86VV4 465 aaPredicted RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 SLC22A16Q86VW1 577 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 RBM45Q8IUH3 476 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 ZNF563Q8TA94 476 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 DTNBP1Q96EV8 351 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 SLC47A1Q96FL8 570 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 RSRC1Q96IZ7 334 aaKnown RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 MCHR1Q99705 422 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 PRR14Q9BWN1 585 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 DENND2DQ9H6A0 471 aaPredicted RBP11.13□□□□□ -0.63
SDC1-206ENST00000482879 B4GALT7Q9UBV7 327 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 AURKCQ9UQB9 309 aa11.13□□□□□ -0.63
SDC1-206ENST00000482879 C15orf41Q9Y2V0 281 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms