RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 BEND4Q6ZU67 534 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 MTERF4Q7Z6M4 381 aaKnown RBP13.62□□□□□ -0.23
LIMS3-203ENST00000480744 YTHDF3Q7Z739 585 aaKnown RBP13.62□□□□□ -0.23
LIMS3-203ENST00000480744 GTF2IRD2Q86UP8 949 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 TMCO5AQ8N6Q1 288 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 FBXO27Q8NI29 283 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 PRPF18Q99633 342 aaKnown RBP13.62□□□□□ -0.23
LIMS3-203ENST00000480744 TMEM109Q9BVC6 243 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 ACTR6Q9GZN1 396 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 HOXD1Q9GZZ0 328 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 TIGARQ9NQ88 270 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 ZDHHC2Q9UIJ5 367 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 KCNE3Q9Y6H6 103 aa13.62□□□□□ -0.23
LIMS3-203ENST00000480744 H7C1Q1 480 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 ZNF195O14628 629 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 SMAD7O15105 426 aaKnown RBP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 PABPC4LP0CB38 370 aaKnown RBP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 CREB1P16220 341 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 PRPS1L1P21108 318 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 ELK4P28324 431 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 SERPINB5P36952 375 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 P2RX1P51575 399 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 CCR4P51679 360 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 ZNF239Q16600 458 aaKnown RBP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 PGS1Q32NB8 556 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 TMEM176BQ3YBM2 270 aaPredicted RBP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 KLHL26Q53HC5 615 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 TMEM201Q5SNT2 666 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 ZNF704Q6ZNC4 412 aaPredicted RBP13.61□□□□□ -0.23
LIMS3-203ENST00000480744 NATD1Q8N6N6 113 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 OR5D16Q8NGK9 328 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 PPP1R14CQ8TAE6 165 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 SFXN5Q8TD22 340 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 ABHD3Q8WU67 409 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 PLPPR2Q96GM1 343 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 OR7D2Q96RA2 312 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 DUSP26Q9BV47 211 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 SRXN1Q9BYN0 137 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 GPATCH2Q9NW75 528 aa13.61□□□□□ -0.23
LIMS3-203ENST00000480744 GJE1A6NN92 205 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 KLF4O43474 513 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 EFNA2O43921 213 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 BPGMP07738 259 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 G6PDP11413 515 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 ATP12AP54707 1039 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 RPS26P62854 115 aaKnown RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 TOMM34Q15785 309 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 PLEKHM3Q6ZWE6 761 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 PSMA8Q8TAA3 256 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 RNF128Q8TEB7 428 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 CPNE4Q96A23 557 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 MOAP1Q96BY2 351 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 COQ8BQ96D53 544 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 PPP1R36Q96LQ0 422 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 ZIM3Q96PE6 472 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 ROPN1BQ9BZX4 212 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 BHLHE41Q9C0J9 482 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 ROPN1Q9HAT0 212 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 ICAM5Q9UMF0 924 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 GPR52Q9Y2T5 361 aa13.6□□□□□ -0.23
LIMS3-203ENST00000480744 GPC6Q9Y625 555 aaPredicted RBP13.6□□□□□ -0.23
LIMS3-203ENST00000480744 CYP7B1O75881 506 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 NTN1O95631 604 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 PLAUP00749 431 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 NR1H2P55055 460 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 SUMO3P55854 103 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 HBA1P69905 142 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 RNPS1Q15287 305 aaKnown RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 TSC22D1Q15714 1073 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 KRT71Q3SY84 523 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 BEND6Q5SZJ8 279 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 FCRLAQ7L513 359 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 NUFIP2Q7Z417 695 aaKnown RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 TUSC5Q8IXB3 177 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 CLEC4FQ8N1N0 589 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 CIARTQ8N365 385 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 GPR119Q8TDV5 335 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 TMEM171Q8WVE6 324 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 COX4I2Q96KJ9 171 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 PKNOX2Q96KN3 472 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 BDH2Q9BUT1 245 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 KLHL13Q9P2N7 655 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 DTNAQ9Y4J8 743 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 ACTL7BQ9Y614 415 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 NSD1Q96L73 2696 aaPredicted RBP13.59□□□□□ -0.23
LIMS3-203ENST00000480744 USF3Q68DE3 2245 aa13.59□□□□□ -0.23
LIMS3-203ENST00000480744 IGHV3-15A0A0B4J1V0 119 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 WDR91A4D1P6 747 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 TRIM64A6NGJ6 449 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 TRIM64BA6NI03 449 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 FAM171A2A8MVW0 826 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 ZNF264O43296 627 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 SOX30O94993 753 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 LY6G6DO95868 133 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 HEXAP06865 529 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 UBL4AP11441 157 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 PRKCAP17252 672 aa13.58□□□□□ -0.24
LIMS3-203ENST00000480744 PSMB1P20618 241 aaKnown RBP13.58□□□□□ -0.24
LIMS3-203ENST00000480744 IL32P24001 234 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms