RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PRPF18Q99633 342 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 PIP5K1AQ99755 562 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 SMR3AQ99954 134 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 NOP53Q9NZM5 478 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 V9GYY5 206 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 FN1P02751 2386 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 CFLARO15519 480 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 NUDT14O95848 222 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 PRKCAP17252 672 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ADH6P28332 368 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 SOAT1P35610 550 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ATP12AP54707 1039 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 CLDN8P56748 225 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 CARD18P57730 90 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF844Q08AG5 666 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ACKR1Q16570 336 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 NUDCD3Q8IVD9 361 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 CLECL1Q8IZS7 167 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF781Q8N8C0 355 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 FBXO27Q8NI29 283 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 GPR119Q8TDV5 335 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ABHD3Q8WU67 409 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ZIM3Q96PE6 472 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 SDF2Q99470 211 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 C20orf27Q9GZN8 174 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 COQ10BQ9H8M1 238 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 DTNAQ9Y4J8 743 aa16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 GPC6Q9Y625 555 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-206ENST00000473405 ABCA2Q9BZC7 2435 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 UQCRHLA0A096LP55 91 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 CENPVL1A0A0U1RR11 272 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 ESPNB1AK53 854 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 H3BNH8 94 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 ETV2O00321 342 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF195O14628 629 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 KLF4O43474 513 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 SOX30O94993 753 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 SERPINE1P05121 402 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 TUBBP07437 444 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PPP3CBP16298 524 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 MAD2L1Q13257 205 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 SMU1Q2TAY7 513 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PGS1Q32NB8 556 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 Q5PR19 223 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PDSS1Q5T2R2 415 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 SHEQ5VZ18 495 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 OR4F3Q6IEY1 312 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 LRRC75A-AS1Q8N1F1 130 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 CLEC4FQ8N1N0 589 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PPP1R14CQ8TAE6 165 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 ROBO4Q8WZ75 1007 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PIGTQ969N2 578 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 CPNE4Q96A23 557 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 C18orf12Q96KH6 178 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 PPP1R36Q96LQ0 422 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 CCL19Q99731 98 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 NMUR2Q9GZQ4 415 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 C12orf49Q9H741 205 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 KCNE5Q9UJ90 142 aa16.76■□□□□ 0.27
CCDC88B-206ENST00000473405 WDR91A4D1P6 747 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 SMPD2O60906 423 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 FPR1P21462 350 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 ABCE1P61221 599 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 SKP2Q13309 424 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 CHI3L2Q15782 390 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 KRT71Q3SY84 523 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 SLC25A53Q5H9E4 307 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 PDZK1Q5T2W1 519 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 BHLHB9Q6PI77 547 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 C20orf204Q6ZNR8 217 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 BEND4Q6ZU67 534 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 OLIG3Q7RTU3 272 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 BIVMQ86UB2 503 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF614Q8N883 585 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 IGFBPL1Q8WX77 278 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 SORT1Q99523 831 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 ACTR6Q9GZN1 396 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 AKTIPQ9H8T0 292 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 KLHL13Q9P2N7 655 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 JMJD1CQ15652 2540 aa16.75■□□□□ 0.27
CCDC88B-206ENST00000473405 RNF103-CHMP3A0A140T963 221 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 GTPBP1O00178 669 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 RNASET2O00584 256 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 BIRC5O15392 142 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 ZNF264O43296 627 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 FCMRO60667 390 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 SCN2BO60939 215 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 GCM2O75603 506 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 DHRS4L1P0CG22 281 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 UBL4AP11441 157 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 PSMB1P20618 241 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 RNPS1Q15287 305 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 TMEM176BQ3YBM2 270 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 BEX5Q5H9J7 111 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 TFAP2EQ6VUC0 442 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 C6orf120Q7Z4R8 191 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 STK32CQ86UX6 486 aa16.74■□□□□ 0.27
CCDC88B-206ENST00000473405 TMCO5AQ8N6Q1 288 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms