RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 HEBP1Q9NRV9 189 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GFOD1Q9NXC2 390 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM159BA6NKW6 160 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC22A2O15244 555 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PRSS56P0CW18 603 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GABRA4P48169 554 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TRMT2BQ96GJ1 504 aaKnown RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CSNK1G3Q9Y6M4 447 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC9B1P1A6NJY1 282 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAAHO00519 579 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NXPH3O95157 252 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NUDT7P0C024 238 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CDKN2CP42773 168 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAD52P43351 418 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MEDAGQ5VYS4 303 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 STEAP4Q687X5 459 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GLIS1Q8NBF1 620 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SCCPDHQ8NBX0 429 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MEPEQ9NQ76 525 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZMAT5Q9UDW3 170 aaKnown RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC7A7Q9UM01 511 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PUS1Q9Y606 427 aaKnown RBP eCLIP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KIAA0513O60268 411 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HOXD11P31277 338 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CSNK1A1P48729 337 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF45Q02386 682 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SPHARQ15513 63 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TRAM1Q15629 374 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD163Q86VB7 1156 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PREBQ9HCU5 417 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD300LBA8K4G0 201 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR2T1O43869 369 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PABPC4LP0CB38 370 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MTNR1AP48039 350 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 AGFG1P52594 562 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MYBPHQ13203 477 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PDLIM3Q53GG5 364 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC39A5Q6ZMH5 540 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HHIPL1Q96JK4 782 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SIDT1Q9NXL6 827 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF223Q9UK11 482 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM96BQ9Y3D0 163 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD63P08962 238 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 IL2RGP31785 369 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SPINT3P49223 89 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARSFP54793 590 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GNB1P62873 340 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TCTE1Q5JU00 501 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TCEAL8Q8IYN2 117 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 METTL25Q8N6Q8 603 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 BOCQ9BWV1 1114 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LTN1O94822 1766 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MST1RQ04912 1400 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MEIOCA2RUB1 952 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 BET1O15155 118 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR10J4P0C629 311 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HTR2BP41595 481 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MAGEB1P43366 347 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FUT2Q10981 343 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PSAPL1Q6NUJ1 521 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SDR9C7Q8NEX9 313 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HSD17B8Q92506 261 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC25A18Q9H1K4 315 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CHRDQ9H2X0 955 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KLHL21Q9UJP4 597 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 A6NIN4 97 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 M0R3H8 397 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD46P15529 392 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SRP14P37108 136 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PAFAH1B3Q15102 231 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C4orf17Q53FE4 359 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MOB3CQ70IA8 216 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TTC9BQ8N6N2 239 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NANPQ8TBE9 248 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ST8SIA2Q92186 375 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HAS2Q92819 552 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TBC1D20Q96BZ9 403 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 VRK1Q99986 396 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GPN2Q9H9Y4 310 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 WDR37Q9Y2I8 494 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SERTM2A0A1B0GWG4 89 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 UBFD1O14562 309 aaKnown RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SNAI1O95863 264 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PSMB10P40306 273 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MVKQ03426 396 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM26DQ5JW98 314 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TRIB1Q96RU8 372 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ELF4Q99607 663 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PINK1Q9BXM7 581 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SAV1Q9H4B6 383 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GLB1P16278 677 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CDKN2DP55273 166 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUSC1Q2TAM9 212 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TRNP1Q6NT89 227 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR5L1Q8NGL2 311 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CCDC74BQ96LY2 380 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SEMA4CQ9C0C4 833 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ST6GALNAC4Q9H4F1 302 aa12.48□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 EFSO43281 561 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms