RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NPIPA5E9PKD4 350 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 TFECO14948 347 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 GSTA4O15217 222 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 GSC2O15499 205 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SUV39H1O43463 412 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 EIF4E2O60573 245 aaKnown RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 CBR3O75828 277 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 GKN3PP0CG01 181 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 PRKAR1BP31321 381 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 KCNJ5P48544 419 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 P2RX1P51575 399 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 CCR4P51679 360 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 TDGF1P3P51864 188 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 HOXC5Q00444 222 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 HSF1Q00613 529 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 MS4A2Q01362 244 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 LARS2Q15031 903 aaKnown RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 DNAL1Q4LDG9 190 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 EIPR1Q53HC9 387 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 WIPI1Q5MNZ9 446 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 GLYATQ6IB77 296 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 YRDCQ86U90 279 aaKnown RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SLC22A16Q86VW1 577 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SPPL2CQ8IUH8 684 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 LACC1Q8IV20 430 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 CMIPQ8IY22 773 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 FAM109AQ8N4B1 249 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 FAM83FQ8NEG4 500 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 OR4D11Q8NGI4 311 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 FAR1Q8WVX9 515 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 NR4A3Q92570 626 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 C1GALT1C1Q96EU7 318 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 BARD1Q99728 777 aaKnown RBP13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SLC6A15Q9H2J7 730 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 NPIPA1Q9UND3 350 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SVILO95425 2214 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ANKUB1A6NFN9 424 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 PYCARD-AS1I3L0S3 204 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ACOT7O00154 380 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ARPC2O15144 300 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ZIC3O60481 467 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 SERPINB7O75635 380 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 DNAJC8O75937 253 aaPredicted RBP13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ATP5HO75947 161 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 PDE9AO76083 593 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 CRYABP02511 175 aaKnown RBP13.42□□□□□ -0.26
COL9A3-209ENST00000469852 HPNP05981 417 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 TNFRSF1BP20333 461 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ATP6V1B2P21281 511 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 DPP4P27487 766 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 RYKP34925 604 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 TOMM20Q15388 145 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 CYBRD1Q53TN4 286 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 PGM2L1Q6PCE3 622 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ASRGL1Q7L266 308 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 GRAMD2AQ8IUY3 354 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 OR5M1Q8NGP8 315 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 CPT1CQ8TCG5 803 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 GPR119Q8TDV5 335 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 CCDC124Q96CT7 223 aaKnown RBP13.42□□□□□ -0.26
COL9A3-209ENST00000469852 SLX1AQ9BQ83 275 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 SPATA5L1Q9BVQ7 753 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 PINK1Q9BXM7 581 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 OR2B2Q9GZK3 357 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 LRMDAQ9H2I8 198 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 EXOSC3Q9NQT5 275 aaKnown RBP13.42□□□□□ -0.26
COL9A3-209ENST00000469852 OLAHQ9NV23 265 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 MED17Q9NVC6 651 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 B4GALT7Q9UBV7 327 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF232Q9UNY5 417 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 VDAC3Q9Y277 283 aa13.42□□□□□ -0.26
COL9A3-209ENST00000469852 RPH3AQ9Y2J0 694 aaPredicted RBP13.42□□□□□ -0.26
COL9A3-209ENST00000469852 M0R3H8 397 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 TRAPPC6AO75865 159 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 SERPINA1P01009 418 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 FESP07332 822 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ENDOUP21128 410 aaKnown RBP13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ME2P23368 584 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 MSX1P28360 303 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 SRD5A2P31213 254 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ACAA2P42765 397 aaKnown RBP13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF136P52737 540 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 DSCR4P56555 118 aaPredicted RBP13.41□□□□□ -0.26
COL9A3-209ENST00000469852 B3GALT5-AS1P59052 145 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 EPS8Q12929 822 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 SPATS1Q496A3 300 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 FGD2Q7Z6J4 655 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 RBM45Q8IUH3 476 aaKnown RBP13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ULK2Q8IYT8 1036 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ARHGAP24Q8N264 748 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 FAM86B1Q8N7N1 296 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 OR5W2Q8NH69 310 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 POC1BQ8TC44 478 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 SLC26A7Q8TE54 656 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 FAM162AQ96A26 154 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 ARHGDIGQ99819 225 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 PRR14Q9BWN1 585 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 CACYBPQ9HB71 228 aaKnown RBP13.41□□□□□ -0.26
COL9A3-209ENST00000469852 DKKL1Q9UK85 242 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 SLC6A5Q9Y345 797 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms