RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 BHLHE40O14503 412 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 CBX7O95931 251 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 PSG6Q00889 435 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 EIF2B5Q13144 721 aaKnown RBP17.67■□□□□ 0.42
VIM-203ENST00000469543 PYDC2Q56P42 97 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 ZNF362Q5T0B9 420 aaPredicted RBP17.67■□□□□ 0.42
VIM-203ENST00000469543 CACYBPQ9HB71 228 aaKnown RBP17.67■□□□□ 0.42
VIM-203ENST00000469543 SCML1Q9UN30 329 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 TRAPPC4Q9Y296 219 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 HEATR5AQ86XA9 2040 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 ASXL3Q9C0F0 2248 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 SHISA7A6NL88 538 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 PLOD3O60568 738 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 CCNKO75909 580 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 AKT2P31751 481 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 BTG2P78543 158 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 DSG2Q14126 1118 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 ZNF322Q6U7Q0 402 aaPredicted RBP17.67■□□□□ 0.42
VIM-203ENST00000469543 CDRT4Q8N9R6 151 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 RNF31Q96EP0 1072 aa17.67■□□□□ 0.42
VIM-203ENST00000469543 B4DGG1 531 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 DBIP07108 87 aaKnown RBP17.66■□□□□ 0.42
VIM-203ENST00000469543 GXYLT1Q4G148 440 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 RFLNBQ8N5W9 214 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 CLDN22Q8N7P3 220 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 OR10H4Q8NGA5 316 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 ASB12Q8WXK4 309 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 TOE1Q96GM8 510 aaKnown RBP17.66■□□□□ 0.42
VIM-203ENST00000469543 HS6ST2Q96MM7 605 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 TNFRSF13CQ96RJ3 184 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 C11orf54Q9H0W9 315 aaPredicted RBP17.66■□□□□ 0.42
VIM-203ENST00000469543 TNFRSF10CO14798 259 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 CHST10O43529 356 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 BRINP1O60477 761 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 AGR2O95994 175 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 BMP7P18075 431 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 HTR3AP46098 478 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 FOXK2Q01167 660 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 HHEXQ03014 270 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 SF3B4Q15427 424 aaKnown RBP eCLIP17.66■□□□□ 0.429e-6■■□□□ 14.4
VIM-203ENST00000469543 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.66■□□□□ 0.422e-13■□□□□ 9.3
VIM-203ENST00000469543 DDI2Q5TDH0 399 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 CD200R1LQ6Q8B3 271 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 SLC7A5P1Q8MH63 180 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 SLC37A3Q8NCC5 494 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 GPBAR1Q8TDU6 330 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 PEX11GQ96HA9 241 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 GPR174Q9BXC1 333 aa17.66■□□□□ 0.42
VIM-203ENST00000469543 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 IMPA2O14732 288 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 OR10H2O60403 315 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 TNFP01375 233 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 UBE2IP63279 158 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 GPR50Q13585 617 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 AGAP6Q5VW22 663 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 SAMD14Q8IZD0 417 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 ARL14Q8N4G2 192 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 KLHL36Q8N4N3 616 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 LRRC17Q8N6Y2 441 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 DMRTB1Q96MA1 342 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 AGAP4Q96P64 663 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 BEX2Q9BXY8 128 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 LYRM4Q9HD34 91 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 DUSP22Q9NRW4 184 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 EXOGQ9Y2C4 368 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 GSTK1Q9Y2Q3 226 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 PCDH15Q96QU1 1955 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 SLC9B1P1A6NJY1 282 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 J3QRE1 110 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 DYRK3O43781 588 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 IGHA1P01876 353 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 THBS1P07996 1170 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 RPS4Y1P22090 263 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 POU6F2P78424 691 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 NIPAL3Q6P499 406 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 IL20RBQ6UXL0 311 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 PARGQ86W56 976 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 KISS1RQ969F8 398 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 CTHRC1Q96CG8 243 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 SPACA7Q96KW9 195 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 WDFY2Q96P53 400 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 PRRG3Q9BZD7 231 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 SIGLEC7Q9Y286 467 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 PLA2G10O15496 165 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 THEGLP0DJG4 465 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 ZNF10P21506 573 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 PAICSP22234 425 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 MAZP56270 477 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 COPZ1P61923 177 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 E2F1Q01094 437 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 FZD2Q14332 565 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 PRPF38BQ5VTL8 546 aaKnown RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 RSBN1Q5VWQ0 802 aaPredicted RBP17.65■□□□□ 0.42
VIM-203ENST00000469543 CNIH2Q6PI25 160 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 VWA5B2Q8N398 1253 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 CADM2Q8N3J6 435 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 ALG8Q9BVK2 526 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 TWSG1Q9GZX9 223 aa17.65■□□□□ 0.42
VIM-203ENST00000469543 A0A0J9YY10 115 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms