RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 SLC35G5Q96KT7 338 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 SDF2Q99470 211 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 OPN3Q9H1Y3 402 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-207ENST00000467985 CXXC4Q9H2H0 198 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 LIME1Q9H400 295 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 MANSC1Q9H8J5 431 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 TIGARQ9NQ88 270 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 CCM2LQ9NUG4 571 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-207ENST00000467985 EXD2Q9NVH0 621 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 CARD8Q9Y2G2 431 aa17.12■□□□□ 0.33
COL7A1-207ENST00000467985 GPC6Q9Y625 555 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-207ENST00000467985 MED13LQ71F56 2210 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 EIF4E2O60573 245 aaKnown RBP17.11■□□□□ 0.33
COL7A1-207ENST00000467985 STX11O75558 287 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 HRGP04196 525 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 PABPC4LP0CB38 370 aaKnown RBP17.11■□□□□ 0.33
COL7A1-207ENST00000467985 POU2F1P14859 743 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 UGT2B10P36537 528 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 KCNJ5P48544 419 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 CTBP2P56545 445 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 FAM27E3Q08E93 113 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 ARHGAP11BQ3KRB8 267 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.11■□□□□ 0.33
COL7A1-207ENST00000467985 GTF2IRD2BQ6EKJ0 949 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 PAMR1Q6UXH9 720 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 GTF2IRD2Q86UP8 949 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF614Q8N883 585 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 TOR1AIP2Q8NFQ8 470 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 OR6K3Q8NGY3 331 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 POC1BQ8TC44 478 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 OIT3Q8WWZ8 545 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 MBD6Q96DN6 1003 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 KLHL15Q96M94 604 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 NPAS1Q99742 590 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 FANCFQ9NPI8 374 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 PNPOQ9NVS9 261 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF226Q9NYT6 803 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 PLEKHA6Q9Y2H5 1048 aa17.11■□□□□ 0.33
COL7A1-207ENST00000467985 NIPBLQ6KC79 2804 aaeCLIP17.11■□□□□ 0.33
COL7A1-207ENST00000467985 VPS13CQ709C8 3753 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 NPIPA5A0A0B4J1W7 369 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 A0A0J9YW62 118 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 NPIPA7E9PJI5 369 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 C16orf97H3BN30 126 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 TNFSF11O14788 317 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 ANKRD28O15084 1053 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF264O43296 627 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 CXCL13O43927 109 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 SCN2BO60939 215 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 SS18L1O75177 396 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-207ENST00000467985 RAF1P04049 648 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 GUSBP08236 651 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 NPIPA8P0DM63 369 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 UBL4AP11441 157 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 IL11P20809 199 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 UQCRC2P22695 453 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 SLC6A8P48029 635 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 CARD18P57730 90 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 RPS26P62854 115 aaKnown RBP17.1■□□□□ 0.33
COL7A1-207ENST00000467985 FOXF1Q12946 379 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 ATAD3BQ5T9A4 648 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 CBLN3Q6UW01 205 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 C16orf62Q7Z3J2 963 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 SPATA19Q7Z5L4 167 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 GPR119Q8TDV5 335 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 REXO5Q96IC2 774 aaKnown RBP17.1■□□□□ 0.33
COL7A1-207ENST00000467985 ALPK1Q96QP1 1244 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 MED18Q9BUE0 208 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 TMEM185BQ9H7F4 350 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 PLEKHF2Q9H8W4 249 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 PLSCR4Q9NRQ2 329 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 THAP1Q9NVV9 213 aa17.1■□□□□ 0.33
COL7A1-207ENST00000467985 FLNAP21333 2647 aaKnown RBP17.09■□□□□ 0.33
COL7A1-207ENST00000467985 TRPC5OSA6NMA1 111 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 E9PBE3 544 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 OPN1LWP04000 364 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 S100A3P33764 101 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 LRRC74AQ0VAA2 488 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF141Q15928 474 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 TMCO5AQ8N6Q1 288 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF610Q8N9Z0 462 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 OR5W2Q8NH69 310 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 FBXO27Q8NI29 283 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 ZNF75CPQ92670 426 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-207ENST00000467985 OSTF1Q92882 214 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 ARSGQ96EG1 525 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 MRGPRX4Q96LA9 322 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 SERHL2Q9H4I8 314 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 POLE3Q9NRF9 147 aa17.09■□□□□ 0.33
COL7A1-207ENST00000467985 SERINC4A6NH21 518 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 SLCO1B7G3V0H7 640 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 ZNF195O14628 629 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 HDAC3O15379 428 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 OIP5O43482 229 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 SNNO75324 88 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CPSF4O95639 269 aaKnown RBP17.08■□□□□ 0.32
COL7A1-207ENST00000467985 PRKCAP17252 672 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 SFTPDP35247 375 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 CBFBQ13951 182 aa17.08■□□□□ 0.32
COL7A1-207ENST00000467985 KEAP1Q14145 624 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 289.4 ms