RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 ZNF550Q7Z398 422 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 DHFR2Q86XF0 187 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 CLIP4Q8N3C7 705 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 TMEM251Q8N6I4 163 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 GPR32P1Q8NGA4 272 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 CNOT9Q92600 299 aaKnown RBP13.82□□□□□ -0.2
NPHP4-205ENST00000466897 C1GALT1C1Q96EU7 318 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 NSMCE2Q96MF7 247 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 JSRP1Q96MG2 331 aaPredicted RBP13.82□□□□□ -0.2
NPHP4-205ENST00000466897 GNRHR2Q96P88 292 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 BARD1Q99728 777 aaKnown RBP13.82□□□□□ -0.2
NPHP4-205ENST00000466897 ARHGDIGQ99819 225 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 OR2B2Q9GZK3 357 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 RLIMQ9NVW2 624 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 SLC7A8Q9UHI5 535 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 FBXL2Q9UKC9 423 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 SLC13A4Q9UKG4 626 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 IGSF10Q6WRI0 2623 aa13.82□□□□□ -0.2
NPHP4-205ENST00000466897 C7orf72A4D263 438 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 CFAP73A6NFT4 308 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 C17orf51A8MQB3 221 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 OIP5O43482 229 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 STAMBPO95630 424 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 SERPINA1P01009 418 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 HPNP05981 417 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 FESP07332 822 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 RFPL3SP0C7P2 107 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 UQCRBP14927 111 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 MSX2P35548 267 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-205ENST00000466897 PPIAP62937 165 aaKnown RBP13.81□□□□□ -0.2
NPHP4-205ENST00000466897 MS4A2Q01362 244 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 NRF1Q16656 503 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 GLIPR1L2Q4G1C9 344 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 ZNF324BQ6AW86 544 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-205ENST00000466897 OR5M10Q6IEU7 315 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 FAM180AQ6UWF9 173 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 SIAH3Q8IW03 269 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 SMYD1Q8NB12 490 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 PROX1Q92786 737 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 CCDC124Q96CT7 223 aaKnown RBP13.81□□□□□ -0.2
NPHP4-205ENST00000466897 TRIM15Q9C019 465 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 DSN1Q9H410 356 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 ACKR4Q9NPB9 350 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 MED11Q9P086 117 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 TESQ9UGI8 421 aaKnown RBP13.81□□□□□ -0.2
NPHP4-205ENST00000466897 POMPQ9Y244 141 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 SLC9A8Q9Y2E8 581 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 COL6A6A6NMZ7 2263 aa13.81□□□□□ -0.2
NPHP4-205ENST00000466897 FMO6PO60774 539 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 IGHG3P01860 377 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 PGCP20142 388 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 GDF1P27539 372 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ACAA2P42765 397 aaKnown RBP13.8□□□□□ -0.2
NPHP4-205ENST00000466897 PMP22Q01453 160 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ALDH6A1Q02252 535 aaKnown RBP13.8□□□□□ -0.2
NPHP4-205ENST00000466897 EPS8Q12929 822 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 PLPPR5Q32ZL2 321 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 NDUFAF6Q330K2 333 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 SOWAHCQ53LP3 525 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-205ENST00000466897 RNFT1Q5M7Z0 435 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 COMTD1Q86VU5 262 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 TMCO5AQ8N6Q1 288 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 GPR119Q8TDV5 335 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 TMEM234Q8WY98 164 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ST8SIA1Q92185 356 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ZBTB8AQ96BR9 441 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 SH3YL1Q96HL8 342 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-205ENST00000466897 PLSCR2Q9NRY7 297 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ATRXP46100 2492 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 ZFYVE26Q68DK2 2539 aa13.8□□□□□ -0.2
NPHP4-205ENST00000466897 AQP12BA6NM10 295 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 FAM47E-STBD1D6RA91 191 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 TFECO14948 347 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ADAM11O75078 769 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 LINGO3P0C6S8 592 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ZNF17P17021 662 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 HOXB6P17509 224 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ATP6V1B2P21281 511 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 DPP4P27487 766 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ADH6P28332 368 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 RFC3P40938 356 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 EIF1P41567 113 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 MAGEA5P43359 124 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 RNF144AP50876 292 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ZNF41P51814 821 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 ZNF136P52737 540 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 RGS8P57771 180 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 KCNC4Q03721 635 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 TMEM44Q2T9K0 475 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 SLC25A53Q5H9E4 307 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 AQP12AQ8IXF9 295 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 LSMEM1Q8N8F7 131 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 FAR1Q8WVX9 515 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 GEMIN6Q8WXD5 167 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 SLC39A7Q92504 469 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 NR4A3Q92570 626 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 UTP4Q969X6 686 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 POLR2J2Q9GZM3 115 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 POLR2J3Q9H1A7 115 aaKnown RBP13.79□□□□□ -0.2
NPHP4-205ENST00000466897 AGPAT4Q9NRZ5 378 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms