RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OR52N1Q8NH53 320 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 OR51A7Q8NH64 312 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 NEIL3Q8TAT5 605 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PTP4A1Q93096 173 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PTCHD1Q96NR3 888 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 TIMP4Q99727 224 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 USP36Q9P275 1121 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 RBMX2Q9Y388 322 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SIRT4Q9Y6E7 314 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SLCO1B1Q9Y6L6 691 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 TFECO14948 347 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 POLR1CO15160 346 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 CHST10O43529 356 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 HPGDSO60760 199 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 CCNKO75909 580 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PAICSP22234 425 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 NR4A2P43354 598 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 HTR3AP46098 478 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 RABIFP47224 123 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PSG6Q00889 435 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 FOXK2Q01167 660 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SCN1BQ07699 218 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ACSM1Q08AH1 577 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PYDC2Q56P42 97 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PDZK1Q5T2W1 519 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 PRPF38BQ5VTL8 546 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ZCCHC12Q6PEW1 402 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 TMEM91Q6ZNR0 172 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 UBQLNLQ8IYU4 475 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 UBE2J2Q8N2K1 259 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 VWA5B2Q8N398 1253 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 LNX2Q8N448 690 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ACBD7Q8N6N7 88 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SMAP2Q8WU79 429 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 DNAJA4Q8WW22 397 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 AP3S1Q92572 193 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 IFT27Q9BW83 186 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 GSDMCQ9BYG8 508 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 MMP28Q9H239 520 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 FLRT3Q9NZU0 649 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 MALT1Q9UDY8 824 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SIGLEC7Q9Y286 467 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 OR5K3A6NET4 321 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 OR2W5A6NFC9 320 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 PRAMEF26H0Y7S4 382 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HRKO00198 91 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HYAL3O43820 417 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 OR10H2O60403 315 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CDC123O75794 336 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 IGKV1D-16P01601 117 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CLUP10909 449 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 APEX1P27695 318 aaKnown RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 NOS3P29474 1203 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 BMP8BP34820 402 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 EMDP50402 254 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 SLC16A1P53985 500 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HHEXQ03014 270 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 AMZ1Q400G9 498 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 MANEAQ5SRI9 462 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 TMPRSS11FQ6ZWK6 438 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 BMP8AQ7Z5Y6 402 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 GATAD2AQ86YP4 633 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 GID4Q8IVV7 300 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CDK20Q8IZL9 346 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 SLC37A3Q8NCC5 494 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CHAC2Q8WUX2 184 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 KISS1RQ969F8 398 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 ATF6BQ99941 703 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 ALG8Q9BVK2 526 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HOXD1Q9GZZ0 328 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 OR51V1Q9H2C8 321 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 FBXL4Q9UKA2 621 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 CYP8B1Q9UNU6 501 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 MED31Q9Y3C7 131 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 COL4A2P08572 1712 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 A0A0A6YYC8 382 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 KIR2DS5A0A0G2JLQ3 304 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 A0A0G2JNG1 304 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 SPTY2D1-AS1A0A0U1RR47 76 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 FAM221BA6H8Z2 402 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 TGFBR3LH3BV60 316 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 I3L1I5 382 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 KIR2DS3K7RE56 304 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 HRO43593 1189 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 FMO6PO60774 539 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 NKX2-2O95096 273 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 RCBTB2O95199 551 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 NGFRP08138 427 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 MRPL3P09001 348 aaKnown RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 SLC35E2P0CK97 266 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 IL9P15248 144 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 S1PR1P21453 382 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 DRD5P21918 477 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 RAB38P57729 211 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 RPS7P62081 194 aaKnown RBP8.27□□□□□ -1.09
SYNE1-217ENST00000466159 FZD2Q14332 565 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 KIR2DS5Q14953 304 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 P2RY14Q15391 338 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 RAB30Q15771 203 aa8.27□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF362Q5T0B9 420 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms