RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 PNLIPRP2P54317 469 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 DLX5P56178 289 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 GCNT6Q5T4J0 391 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 NPSR1Q6W5P4 371 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 SZRD1Q7Z422 152 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 C6orf120Q7Z4R8 191 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 IFNEQ86WN2 208 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 RNF130Q86XS8 419 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 CLEC4FQ8N1N0 589 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 FAM156AQ8NDB6 213 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 MIPOL1Q8TD10 442 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 JADE3Q92613 823 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 TRIM15Q9C019 465 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 GPATCH2Q9NW75 528 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 THUMPD1Q9NXG2 353 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 TAS2R10Q9NYW0 307 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 MAGEL2Q9UJ55 1249 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 DKKL1Q9UK85 242 aa16.34■□□□□ 0.21
SQSTM1-204ENST00000453046 ARHGAP21Q5T5U3 1957 aa16.33■□□□□ 0.21
SQSTM1-204ENST00000453046 ELOVL7A1L3X0 281 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 CD8B2A6NJW9 211 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 SYT5O00445 386 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 PSMG1O95456 288 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 PEX19P40855 299 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 KIR2DL3P43628 341 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 ASCL1P50553 236 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 ACTR3P61158 418 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 SRYQ05066 204 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 RBBP4Q09028 425 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 SNTB1Q13884 538 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 FLOT2Q14254 428 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 OR5M10Q6IEU7 315 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 ZZZ3Q8IYH5 903 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 MICU2Q8IYU8 434 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 C10orf111Q8N326 155 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 RELL2Q8NC24 303 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 NUP43Q8NFH3 380 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 OR4N2Q8NGD1 307 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 OR2B2Q9GZK3 357 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 DENND2DQ9H6A0 471 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 TMEM38AQ9H6F2 299 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 CALHM2Q9HA72 323 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 ACTR3BQ9P1U1 418 aa16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 C19orf53Q9UNZ5 99 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-204ENST00000453046 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 H0Y3Z8 333 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 UPK1AO00322 258 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ACOT8O14734 319 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ANKRD17O75179 2603 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 TNFRSF21O75509 655 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 C1QCP02747 245 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 GGT1P19440 569 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 SRD5A2P31213 254 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 PCGF2P35227 344 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 CRATP43155 626 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ZNF136P52737 540 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 DSTNP60981 165 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ELF3P78545 371 aaPredicted RBP16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 PSG6Q00889 435 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 KPNB1Q14974 876 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ZNHIT3Q15649 155 aaPredicted RBP16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 LCN8Q6JVE9 175 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 AAGABQ6PD74 315 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 SLC30A8Q8IWU4 369 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 C11orf65Q8NCR3 313 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 OR4K17Q8NGC6 315 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 ZPLD1Q8TCW7 415 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 WDR60Q8WVS4 1066 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 GIMAP5Q96F15 307 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 SFXN2Q96NB2 322 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 AKAP9Q99996 3911 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 Q9N2J8 555 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 GMPR2Q9P2T1 348 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 FBXL2Q9UKC9 423 aa16.32■□□□□ 0.2
SQSTM1-204ENST00000453046 MBD3L4A6NDZ8 208 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MBD3L3A6NE82 208 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MBD3L5A6NJ08 208 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 ARPC2O15144 300 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 ETFAP13804 333 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 CPN1P15169 458 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 TCEA1P23193 301 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 CTSSP25774 331 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 RFX3P48380 749 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 PRIM2P49643 509 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 AGFG1P52594 562 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MS4A2Q01362 244 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 LASP1Q14847 261 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 DECR1Q16698 335 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 VMACQ2NL98 169 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 CYP27C1Q4G0S4 372 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MTX3Q5HYI7 312 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 COX20Q5RI15 118 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MFSD12Q6NUT3 480 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 ZCCHC12Q6PEW1 402 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 DHFR2Q86XF0 187 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 PTOV1Q86YD1 416 aa16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 MBD3L2Q8NHZ7 208 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 RNASE6Q93091 150 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-204ENST00000453046 ACTRT3Q9BYD9 372 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms