RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DUSP22Q9NRW4 184 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 NTMQ9P121 344 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 LAMP3Q9UQV4 416 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 GPR52Q9Y2T5 361 aa12.94□□□□□ -0.34
SDC1-204ENST00000429035 JMJD1CQ15652 2540 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 GJE1A6NN92 205 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 CYP7B1O75881 506 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 HSPA4LO95757 839 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 KRT16P08779 473 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 LINGO3P0C6S8 592 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 PSMB1P20618 241 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 ELK4P28324 431 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 SLC7A1P30825 629 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 ALDH3A1P30838 453 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 P2RX1P51575 399 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 RPS4XP62701 263 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 PTGR1Q14914 329 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 RNPS1Q15287 305 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 STK11Q15831 433 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 TMEM176BQ3YBM2 270 aaPredicted RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 ATP6AP1LQ52LC2 224 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 CBLN3Q6UW01 205 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 TFAP2EQ6VUC0 442 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 FCRLAQ7L513 359 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 TDRPQ86YL5 185 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 TUSC5Q8IXB3 177 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 ZNF611Q8N823 705 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 FNDC5Q8NAU1 212 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 OR56A1Q8NGH5 318 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 KISS1RQ969F8 398 aaPredicted RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 GTPBP3Q969Y2 492 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 STACQ99469 402 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 ACTRT3Q9BYD9 372 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 PIGUQ9H490 435 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 CXorf36Q9H7Y0 433 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 EML4Q9HC35 981 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 KLHL13Q9P2N7 655 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 ATP6V1HQ9UI12 483 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 TRAF6Q9Y4K3 522 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 RNF115Q9Y4L5 304 aa12.93□□□□□ -0.34
SDC1-204ENST00000429035 CHD3Q12873 2000 aaKnown RBP12.93□□□□□ -0.34
SDC1-204ENST00000429035 A0A1W2PNR3 127 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 KIAA1324LA8MWY0 1029 aaPredicted RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 ZNF195O14628 629 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 NPHS1O60500 1241 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 SPAG7O75391 227 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 SLU7O95391 586 aaKnown RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 CD3EP07766 207 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 LAMP1P11279 417 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 CCT3P49368 545 aaKnown RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 SUMO3P55854 103 aaPredicted RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 FAPQ12884 760 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 SELENBP1Q13228 472 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 TOMM34Q15785 309 aaPredicted RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 ARL13AQ5H913 290 aaPredicted RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.92□□□□□ -0.34
SDC1-204ENST00000429035 RNF165Q6ZSG1 346 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 MTERF4Q7Z6M4 381 aaKnown RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 PRIMA1Q86XR5 153 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 MAPK1IP1LQ8NDC0 245 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 OR5D16Q8NGK9 328 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 OR2W6PQ8NHA6 318 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 OR5P2Q8WZ92 322 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 COQ10BQ9H8M1 238 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 ANKZF1Q9H8Y5 726 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 ATAD3AQ9NVI7 634 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 GPC6Q9Y625 555 aaPredicted RBP12.92□□□□□ -0.34
SDC1-204ENST00000429035 KCNE3Q9Y6H6 103 aa12.92□□□□□ -0.34
SDC1-204ENST00000429035 CR1P17927 2039 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 ADAP00813 363 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 UBL4AP11441 157 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 CDKN1AP38936 164 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 RPS26P62854 115 aaKnown RBP12.91□□□□□ -0.34
SDC1-204ENST00000429035 MLC1Q15049 377 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 TAB1Q15750 504 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 ADAM5Q6NVV9 412 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 KRTCAP2Q8N6L1 136 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 TOR1AIP2Q8NFQ8 470 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 KBTBD8Q8NFY9 601 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 NEUROG1Q92886 237 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 FBXW5Q969U6 566 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 OR7D2Q96RA2 312 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 TMEM204Q9BSN7 226 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 HOXD1Q9GZZ0 328 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 OR10A4Q9H209 315 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 ESRP2Q9H6T0 727 aaKnown RBP12.91□□□□□ -0.34
SDC1-204ENST00000429035 NGBQ9NPG2 151 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 SLC17A7Q9P2U7 560 aa12.91□□□□□ -0.34
SDC1-204ENST00000429035 A0A1W2PP18 115 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 GCM2O75603 506 aaPredicted RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 LYZL6O75951 148 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 PRKD3O94806 890 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 PRKCAP17252 672 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 ATP12AP54707 1039 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 TNK1Q13470 666 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 QPRTQ15274 297 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 GPR68Q15743 365 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 CLEC12BQ2HXU8 276 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 LSM12Q3MHD2 195 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms