RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PRKD3O94806 890 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 NUDT14O95848 222 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 IGHV3-9P01782 118 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 PROCP04070 461 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 HMGN2P05204 90 aaKnown RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 YES1P07947 543 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 NGFRP08138 427 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 ALOX5P09917 674 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 HPGDP15428 266 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 IGHV1-2P23083 117 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 FRKP42685 505 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 RPL38P63173 70 aaKnown RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 IRX1P78414 480 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 POU6F2P78424 691 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 ITGADQ13349 1161 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 LASP1Q14847 261 aaKnown RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 GALNTL6Q49A17 601 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 VPS26BQ4G0F5 336 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 GTF2IRD2BQ6EKJ0 949 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 CDC73Q6P1J9 531 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 IKBIPQ70UQ0 350 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 GTF2IRD2Q86UP8 949 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 ARIH2OSQ8N7S6 290 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 COX18Q8N8Q8 333 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 OR7A2PQ8NGA2 310 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 CEP70Q8NHQ1 597 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 FAM76AQ8TAV0 307 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 GPR119Q8TDV5 335 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 ZNF75CPQ92670 426 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 REXO5Q96IC2 774 aaKnown RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 C16orf45Q96MC5 204 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 MS4A4EQ96PG1 132 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 PSD2Q9BQI7 771 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 C1QTNF6Q9BXI9 259 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 C1orf109Q9NX04 203 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 PAQR5Q9NXK6 330 aaPredicted RBP7.17□□□□□ -1.26
VIM-202ENST00000421459 NTMQ9P121 344 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 ICAM5Q9UMF0 924 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 STK38LQ9Y2H1 464 aa7.17□□□□□ -1.26
VIM-202ENST00000421459 CENPVL1A0A0U1RR11 272 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 A0A1W2PQD3 144 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 TTC36A6NLP5 189 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 A8MV72 311 aaPredicted RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 E7EQL1 145 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 GTPBP1O00178 669 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 ABCD4O14678 606 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 SMAD9O15198 467 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 TLX2O43763 284 aaPredicted RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 PLIN3O60664 434 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 TMCC2O75069 709 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 LY6HO94772 140 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 H6PDO95479 791 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 SHBGP04278 402 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 ABHD2P08910 425 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 UROSP10746 265 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 PRKCAP17252 672 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 NTF4P34130 210 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 OR3A2P47893 321 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 P2RX1P51575 399 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 CDH11P55287 796 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 FOXG1P55316 489 aaPredicted RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 PDE7AQ13946 482 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 P2RY6Q15077 328 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 PPA1Q15181 289 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 RNPS1Q15287 305 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 KLHL26Q53HC5 615 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 CFAP157Q5JU67 520 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 LIPMQ5VYY2 423 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 PODNL1Q6PEZ8 512 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 B3GLCTQ6Y288 498 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 GSPT2Q8IYD1 628 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 CLEC4FQ8N1N0 589 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 ZNF614Q8N883 585 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 OR6Y1Q8NGX8 325 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 ZFP90Q8TF47 636 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 CPNE4Q96A23 557 aaPredicted RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 FCRL1Q96LA6 429 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 HS6ST2Q96MM7 605 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 BTBD2Q9BX70 525 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 CACNG6Q9BXT2 260 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 MANSC1Q9H8J5 431 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 FANCFQ9NPI8 374 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 ZCCHC3Q9NUD5 404 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 PSMC3IPQ9P2W1 217 aaPredicted RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 DCDC2Q9UHG0 476 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 KCNE5Q9UJ90 142 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 WBP11Q9Y2W2 641 aaKnown RBP7.16□□□□□ -1.26
VIM-202ENST00000421459 SNX8Q9Y5X2 465 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 PRR14LQ5THK1 2151 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 ROS1P08922 2347 aa7.16□□□□□ -1.26
VIM-202ENST00000421459 SMIM23A6NLE4 172 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 SLC28A1O00337 649 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 LSM1O15116 133 aaKnown RBP7.15□□□□□ -1.26
VIM-202ENST00000421459 RGS14O43566 566 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 TBX19O60806 448 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 BCAS1O75363 584 aaPredicted RBP7.15□□□□□ -1.26
VIM-202ENST00000421459 CYP7B1O75881 506 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 IFNA2P01563 188 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 CHRNGP07510 517 aa7.15□□□□□ -1.26
VIM-202ENST00000421459 IFI6P09912 130 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms