RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 ATP6V1C1P21283 382 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 ADH6P28332 368 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 HPCAL1P37235 193 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 P2RX1P51575 399 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 TNK1Q13470 666 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 TOMM34Q15785 309 aaPredicted RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 TMEM176BQ3YBM2 270 aaPredicted RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 NCMAPQ5T1S8 102 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.18□□□□□ -0.3
RPS28-201ENST00000417088 SFRP5Q5T4F7 317 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 CDC73Q6P1J9 531 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 DDIASQ8IXT1 998 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 TWIST2Q8WVJ9 160 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 UBLCP1Q8WVY7 318 aaPredicted RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 OR5P2Q8WZ92 322 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 ZNF524Q96C55 264 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 ACTRT3Q9BYD9 372 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 HOXD1Q9GZZ0 328 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 COQ10BQ9H8M1 238 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 PPCSQ9HAB8 311 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 GP6Q9HCN6 339 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 ADAM21Q9UKJ8 722 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 CARD8Q9Y2G2 431 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 TRAF6Q9Y4K3 522 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 SNX8Q9Y5X2 465 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 GPC6Q9Y625 555 aaPredicted RBP13.18□□□□□ -0.3
RPS28-201ENST00000417088 KCNE3Q9Y6H6 103 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 CADP27708 2225 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 COL6A5A8TX70 2615 aa13.18□□□□□ -0.3
RPS28-201ENST00000417088 ANK3Q12955 4377 aaKnown RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 GJE1A6NN92 205 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 TMEM114B3SHH9 223 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 OVOL3O00110 214 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 PRKD3O94806 890 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 NUDT14O95848 222 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 DDX5P17844 614 aaKnown RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 IL32P24001 234 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ALDH3A1P30838 453 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 CCT3P49368 545 aaKnown RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 ATP12AP54707 1039 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 SUMO3P55854 103 aaPredicted RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 RPS4XP62701 263 aaKnown RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 KRTAP1-1Q07627 177 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 TAB1Q15750 504 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 NDUFAF6Q330K2 333 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ARL13AQ5H913 290 aaPredicted RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 DCST2Q5T1A1 773 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 FCRLAQ7L513 359 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ZNF619Q8N2I2 560 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ZNF527Q8NB42 609 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ATP6V1C2Q8NEY4 427 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 PSMA8Q8TAA3 256 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 GPR119Q8TDV5 335 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 ADAMTS15Q8TE58 950 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 CXorf36Q9H7Y0 433 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 GPATCH2Q9NW75 528 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 RNF115Q9Y4L5 304 aa13.17□□□□□ -0.3
RPS28-201ENST00000417088 NUP214P35658 2090 aaPredicted RBP13.17□□□□□ -0.3
RPS28-201ENST00000417088 ZNF814B7Z6K7 855 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 NPIPB9F8W1W9 429 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 H3BNH8 94 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 GTPBP1O00178 669 aaKnown RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 CLOCKO15516 846 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 PEX11AO75192 247 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ADAP00813 363 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 YES1P07947 543 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 SOD3P08294 240 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 DANCRP0C864 163 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 PRKCAP17252 672 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ENPP1P22413 925 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 RPL3P39023 403 aaKnown RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 TP53BP2Q13625 1128 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 CLEC12BQ2HXU8 276 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 XKR7Q5GH72 579 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ATG4DQ86TL0 474 aaPredicted RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 HOMEZQ8IX15 550 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 EIF1ADQ8N9N8 165 aaKnown RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 LRRN4CLQ8ND94 238 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 OR56A1Q8NGH5 318 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ZFP90Q8TF47 636 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 HSD17B8Q92506 261 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 KISS1RQ969F8 398 aaPredicted RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 PPP3R2Q96LZ3 170 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ESRP2Q9H6T0 727 aaKnown RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 ANKZF1Q9H8Y5 726 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 MKS1Q9NXB0 559 aa13.16□□□□□ -0.3
RPS28-201ENST00000417088 ING1Q9UK53 422 aaPredicted RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 FAF1Q9UNN5 650 aaPredicted RBP13.16□□□□□ -0.3
RPS28-201ENST00000417088 RTTNQ86VV8 2226 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 IGHV3-15A0A0B4J1V0 119 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 NPHS1O60500 1241 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 C6orf47O95873 294 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 CD3EP07766 207 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 KRT16P08779 473 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 MAPK1P28482 360 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 ITGADQ13349 1161 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 PTGR1Q14914 329 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 P2RY6Q15077 328 aa13.15□□□□□ -0.3
RPS28-201ENST00000417088 SPDYE7PQ495Y7 208 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms