RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZNF619Q8N2I2 560 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 PARP16Q8N5Y8 322 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CDRT4Q8N9R6 151 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CCL4L1Q8NHW4 92 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 ZCCHC10Q8TBK6 192 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CDS1Q92903 461 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CCDC74AQ96AQ1 378 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CEP19Q96LK0 163 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 ZNF578Q96N58 590 aaPredicted RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 WDFY2Q96P53 400 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 ZNF350Q9GZX5 532 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 RNF167Q9H6Y7 350 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 SMURF1Q9HCE7 757 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 EXOSC4Q9NPD3 245 aaKnown RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 ASCL3Q9NQ33 180 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 IL20Q9NYY1 176 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 TRAPPC4Q9Y296 219 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 GPR55Q9Y2T6 319 aaPredicted RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 CHST2Q9Y4C5 530 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CDH10Q9Y6N8 788 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 IQCMA0A1B0GVH7 501 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 OR6C74A6NCV1 312 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 H0YGG7 62 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 PLOD3O60568 738 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 STX11O75558 287 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 IL1AP01583 271 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 AVPR1BP47901 424 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 RORCP51449 518 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 ARF3P61204 181 aaPredicted RBP13.72□□□□□ -0.21
USP4-203ENST00000415188 UBE2IP63279 158 aaKnown RBP13.72□□□□□ -0.21
USP4-203ENST00000415188 EEF1A1P68104 462 aaKnown RBP13.72□□□□□ -0.21
USP4-203ENST00000415188 TPBGQ13641 420 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 PGGHGQ32M88 737 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 DEFB134Q4QY38 66 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 ZNF836Q6ZNA1 936 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 SLC22A16Q86VW1 577 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 RNF113BQ8IZP6 322 aaKnown RBP13.72□□□□□ -0.21
USP4-203ENST00000415188 SLC16A11Q8NCK7 471 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 ANKK1Q8NFD2 765 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 SLC9A6Q92581 669 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 RNFT2Q96EX2 444 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 FCRL4Q96PJ5 515 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 SDF2Q99470 211 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 CNPPD1Q9BV87 410 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 JAM3Q9BX67 310 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 PLA2G12AQ9BZM1 189 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 EGLN3Q9H6Z9 239 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 ABCB10Q9NRK6 738 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 PCDHGB6Q9Y5F9 930 aa13.72□□□□□ -0.21
USP4-203ENST00000415188 TRAPPC13A5PLN9 417 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 BOLA2-SMG1P6H3BVE0 249 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 NTN3O00634 580 aaPredicted RBP13.71□□□□□ -0.21
USP4-203ENST00000415188 GPR75O95800 540 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 GAAP10253 952 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 TRHRP34981 398 aaPredicted RBP13.71□□□□□ -0.21
USP4-203ENST00000415188 SOX3P41225 446 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 MTNR1AP48039 350 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 CCL7P80098 99 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 RUNX1T1Q06455 604 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 DUSP5Q16690 384 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 ZNF620Q6ZNG0 422 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 TAF8Q7Z7C8 310 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 LAPTM4BQ86VI4 370 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 CLIP4Q8N3C7 705 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 SDR16C5Q8N3Y7 309 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 POGLUT1Q8NBL1 392 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 ZNF248Q8NDW4 579 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 OR8D4Q8NGM9 314 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 OR10G6Q8NH81 332 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 COL26A1Q96A83 441 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 FAM46AQ96IP4 442 aaKnown RBP13.71□□□□□ -0.21
USP4-203ENST00000415188 COQ7Q99807 217 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 SLC30A2Q9BRI3 323 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 MED18Q9BUE0 208 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 CTPS2Q9NRF8 586 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 C14orf105Q9NVL8 296 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 CPNE7Q9UBL6 633 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 ZNF229Q9UJW7 825 aa13.71□□□□□ -0.21
USP4-203ENST00000415188 KIF26BQ2KJY2 2108 aa13.71□□□□□ -0.22
USP4-203ENST00000415188 SCN3AQ9NY46 2000 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 FASNP49327 2511 aaKnown RBP13.7□□□□□ -0.22
USP4-203ENST00000415188 A0A1W2PQM1 296 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 SLC35F4A4IF30 521 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 SURF4O15260 269 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 TBX1O43435 398 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 FRS3O43559 492 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 FCMRO60667 390 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 TSPAN19P0C672 248 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 ETV5P41161 510 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 ETV1P50549 477 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 DOC2BQ14184 412 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 STEAP3Q658P3 488 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 RPL13AP3Q6NVV1 102 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 HMGN2P46Q86SG4 172 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 SETD6Q8TBK2 473 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 BRIX1Q8TDN6 353 aaKnown RBP13.7□□□□□ -0.22
USP4-203ENST00000415188 UFD1Q92890 307 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 ZG16BQ96DA0 208 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 SLC46A1Q96NT5 459 aa13.7□□□□□ -0.22
USP4-203ENST00000415188 ANKRA2Q9H9E1 313 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms