RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SERPIND1P05546 499 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 UBCP0CG48 685 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 POLR2CP19387 275 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PGCP20142 388 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GTF2E2P29084 291 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TMPOP42166 694 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 P2RY1P47900 373 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 DUSP3P51452 185 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 HMGCS2P54868 508 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CLDN18P56856 261 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RPS4XP62701 263 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CNTN1Q12860 1018 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GRB14Q14449 540 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PSG3Q16557 428 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ACCSLQ4AC99 568 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 LGSNQ5TDP6 509 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 UNQ6126/PRO20091Q6UXV3 157 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TMIGD1Q6UXZ0 262 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GCNT7Q6ZNI0 430 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 C9orf47Q6ZRZ4 202 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 C19orf35Q6ZS72 473 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ASRGL1Q7L266 308 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 NET1Q7Z628 596 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CYP4Z1Q86W10 505 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GPALPP1Q8IXQ4 340 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 FBXL13Q8NEE6 735 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 OR4D6Q8NGJ1 314 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PHOSPHO2Q8TCD6 241 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GPR148Q8TDV2 347 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF473Q8WTR7 871 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PIK3R3Q92569 461 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PIGTQ969N2 578 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PCED1BQ96HM7 432 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MED30Q96HR3 178 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF578Q96N58 590 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PELOQ9BRX2 385 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 URM1Q9BTM9 101 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TRAF4Q9BUZ4 470 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SLC25A51Q9H1U9 297 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 OPN3Q9H1Y3 402 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ANKRD19PQ9H560 264 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 A4GALTQ9NPC4 353 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CHST11Q9NPF2 352 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ADAP2Q9NPF8 381 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MRPL40Q9NQ50 206 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 DYRK4Q9NR20 520 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GDF3Q9NR23 364 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SLC17A5Q9NRA2 495 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TXLNGQ9NUQ3 528 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 NKIRAS1Q9NYS0 192 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 IL36AQ9UHA7 158 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 POFUT2Q9Y2G5 429 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 FKBP7Q9Y680 259 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TTC21AQ8NDW8 1320 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MAPK8IP3Q9UPT6 1336 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ADAMTSL3P82987 1691 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PNPLA6Q8IY17 1366 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SPATA31D1Q6ZQQ2 1576 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RAB19A4D1S5 217 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CCSO14618 274 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ITGB1BP1O14713 200 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TAPBPO15533 448 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 P2RX6O15547 441 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SCN2BO60939 215 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CNOT3O75175 753 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CT62P0C5K7 136 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ADORA3P0DMS8 318 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CD82P27701 267 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CD1CP29017 333 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 IL12BP29460 328 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PDHA2P29803 388 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 HMOX2P30519 316 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CFHR2P36980 270 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GYG1P46976 350 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 FHITP49789 147 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 HSPA2P54652 639 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 B3GALT5-AS1P59052 145 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RPS18P62269 152 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 OC90Q02509 493 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MFAP5Q13361 173 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ART3Q13508 389 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 DGCR6Q14129 220 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ATXN7L3Q14CW9 347 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 VAMP3Q15836 100 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 XKR4Q5GH76 650 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM31Q5JXX7 168 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 AGAP7PQ5VUJ5 663 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 LEG1Q6P5S2 330 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PAQR6Q6TCH4 344 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MRPL21Q7Z2W9 205 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ABHD12BQ7Z5M8 362 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SNX20Q7Z614 316 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 ERI1Q8IV48 349 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RELL2Q8NC24 303 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 AGAP4Q96P64 663 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 MBOAT4Q96T53 435 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 FMO2Q99518 471 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 RPP25Q9BUL9 199 aaKnown RBP3.61□□□□□ -1.83
HMGB1-204ENST00000399489 UGT1A10Q9HAW8 530 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 INPP5EQ9NRR6 644 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms