RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SFRP5Q5T4F7 317 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM217AQ8IXS0 508 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 OR9Q2Q8NGE9 314 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 OR6T1Q8NGN1 323 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 XYLT2Q9H1B5 865 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 THSD1Q9NS62 852 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 BMP2P12643 396 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CPT2P23786 658 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 IL32P24001 234 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 ITGB7P26010 798 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 BMPR1AP36894 532 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 TAS2R30P59541 319 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 PRR22Q8IZ63 422 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 OR1J4Q8NGS1 313 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 PRRC1Q96M27 445 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 HEMK1Q9Y5R4 338 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 DNAJC15Q9Y5T4 150 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 A6NHS1 94 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 C17orf112F2Z3M2 114 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 K7ERQ8 282 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 M0R3H8 397 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 RAB6AP20340 208 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 RAB40BQ12829 278 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 C6orf132Q5T0Z8 1188 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 IER5LQ5T953 404 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 RSPRY1Q96DX4 576 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 MICU1Q9BPX6 476 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 CENPOQ9BU64 300 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 IGSF5Q9NSI5 407 aa12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 BOKQ9UMX3 212 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-204ENST00000389857 KIR2DS5A0A0G2JLQ3 304 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 A0A0G2JNG1 304 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 KIR2DS3K7RE56 304 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 IGHEP01854 428 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 IGHG1P01857 330 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 NFATC3Q12968 1075 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 KIR2DS5Q14953 304 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 PLAG1Q6DJT9 500 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC39A5Q6ZMH5 540 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 CNEP1R1Q8N9A8 125 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SDR9C7Q8NEX9 313 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ELMOD3Q96FG2 381 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 THAP7Q9BT49 309 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 WDPCPO95876 746 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 EIF4EP06730 217 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ETV6P41212 452 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 P2RY2P41231 377 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 MPEG1Q2M385 716 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 CPZQ66K79 652 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 WBP2NLQ6ICG8 309 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SERPINA11Q86U17 422 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OR4N2Q8NGD1 307 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OR5AR1Q8NGP9 310 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 IL1F10Q8WWZ1 152 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 NMNAT2Q9BZQ4 307 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 TRBV11-1A0A0K0K1C0 115 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 GABRA2P47869 451 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 AFF3P51826 1226 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SNRPD2P62316 118 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 MOB3CQ70IA8 216 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR150Q8NGU9 434 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OR2T35Q8NGX2 323 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 BTBD2Q9BX70 525 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 C1QTNF2Q9BXJ5 285 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SLCO3A1Q9UIG8 710 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 CDHR4A6H8M9 788 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 YY2O15391 372 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF623O75123 536 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OLFM2O95897 454 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 TNFRSF1BP20333 461 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 HOXD13P35453 343 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 RAB5CP51148 216 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 RAB33AQ14088 237 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 VEZF1Q14119 521 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OR11L1Q8NGX0 322 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 NDNFQ8TB73 568 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 PTERQ96BW5 349 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF334Q9HCZ1 680 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC22A7Q9Y694 548 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 TSTD3H0UI37 97 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 AIPO00170 330 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 COL9A3Q14050 684 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 TSSK4Q6SA08 328 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 C6orf89Q6UWU4 347 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 BRIX1Q8TDN6 353 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 PSMF1Q92530 271 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 MUL1Q969V5 352 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 RNF186Q9NXI6 227 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 V9GY05 133 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 UBBP0CG47 229 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 UBCP0CG48 685 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 TAS2R19P59542 299 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 RPS27AP62979 156 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 UBA52P62987 128 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 OR51L1Q8NGJ5 315 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 MIB2Q96AX9 1013 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 USP36Q9P275 1121 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 CPNE7Q9UBL6 633 aa12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF443Q9Y2A4 671 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-204ENST00000389857 ARPC4-TTLL3A0A0A6YYG9 625 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms