RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZFHX4Q86UP3 3567 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 IGHV3-20A0A0C4DH32 117 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 A0A0G2JPF8 293 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 TTC36A6NLP5 189 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 HNRNPCL2B2RXH8 293 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 HNRNPCL3B7ZW38 293 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 FAAHO00519 579 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ASNA1O43681 348 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 FADS2O95864 444 aaKnown RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 MT-ND2P03891 347 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 H1F0P07305 194 aaKnown RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 HNRNPCL4P0DMR1 293 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ELAVL4P26378 380 aaKnown RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 MAP2K4P45985 399 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 IDH2P48735 452 aaKnown RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 CCL11P51671 97 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 DCAF7P61962 342 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 TEKQ02763 1124 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 MVKQ03426 396 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 FOXD4Q12950 439 aaPredicted RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 PRAMEF8Q5VWM4 474 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PRAMEF7Q5VXH5 474 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 C19orf48Q6RUI8 117 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 IGFL2Q6UWQ7 119 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PRSS48Q7RTY5 328 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 LACC1Q8IV20 430 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 DND1Q8IYX4 353 aaKnown RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 SLC15A4Q8N697 577 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 NUP43Q8NFH3 380 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 RHOXF1Q8NHV9 184 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ZNF721Q8TF20 911 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 EXTL1Q92935 676 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 FUNDC2Q9BWH2 189 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 DEFB126Q9BYW3 111 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 NTMQ9P121 344 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ABI3Q9P2A4 366 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PRODH2Q9UF12 536 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 M0R3H8 397 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PRAMEF2O60811 474 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 UGT2B17O75795 530 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 OXSR1O95747 527 aaPredicted RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 ADAP00813 363 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 NT5EP21589 574 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 MAN2A2P49641 1150 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 SMIM11AP58511 58 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ID2Q02363 134 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 Q0VFX4 171 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 NFATC3Q12968 1075 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ZNF267Q14586 743 aaPredicted RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 SEC23BQ15437 767 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 LTB4RQ15722 352 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 LINC00303Q3SY05 128 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 GPAT3Q53EU6 434 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ZNF628Q5EBL2 1059 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 DCST1Q5T197 706 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 KLHL17Q6TDP4 642 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 AHSA2Q719I0 299 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 SLC29A4Q7RTT9 530 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 OLIG3Q7RTU3 272 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 COMTD1Q86VU5 262 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 CCDC103Q8IW40 242 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 GPALPP1Q8IXQ4 340 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 FDCSPQ8NFU4 85 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PSMF1Q92530 271 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 KAT2AQ92830 837 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 OR7D2Q96RA2 312 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 WFDC6Q9BQY6 131 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 OR8D2Q9GZM6 311 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ZNF552Q9H707 407 aaPredicted RBP9.39□□□□□ -0.91
VPS53-202ENST00000389040 ACOT13Q9NPJ3 140 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 EQTNQ9NQ60 294 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 PLCXD1Q9NUJ7 323 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 IMPAD1Q9NX62 359 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 ENPP5Q9UJA9 477 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 SLC9A8Q9Y2E8 581 aa9.39□□□□□ -0.91
VPS53-202ENST00000389040 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 OR10H3O60404 316 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 COQ9O75208 318 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 GABRB1P18505 474 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 S1PR1P21453 382 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 CHMP24386 653 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 MASP1P48740 699 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 PGDP52209 483 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 SLC37A1P57057 533 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 CDC42P60953 191 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 RNF4P78317 190 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 MGAT2Q10469 447 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 MFAP5Q13361 173 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 PTGES3Q15185 160 aaKnown RBP9.38□□□□□ -0.91
VPS53-202ENST00000389040 SYT6Q5T7P8 510 aaPredicted RBP9.38□□□□□ -0.91
VPS53-202ENST00000389040 ABHD17BQ5VST6 288 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 ZCCHC12Q6PEW1 402 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 SLC16A12Q6ZSM3 486 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 RPS19BP1Q86WX3 136 aaKnown RBP9.38□□□□□ -0.91
VPS53-202ENST00000389040 ANKRD13BQ86YJ7 626 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 HAS2Q92819 552 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 GIMAP5Q96F15 307 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 SIGLEC11Q96RL6 698 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 COPS4Q9BT78 406 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms