RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SPANXN2Q5MJ10 180 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CLEC12AQ5QGZ9 265 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 TYW3Q6IPR3 259 aaKnown RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SIMC1Q8NDZ2 872 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 OR8D4Q8NGM9 314 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 FGF11Q92914 225 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SLC41A3Q96GZ6 507 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 TEX12Q9BXU0 123 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 TWSG1Q9GZX9 223 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 CRNNQ9UBG3 495 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-202ENST00000374876 PISDQ9UG56 409 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF229Q9UJW7 825 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 NTNG1Q9Y2I2 539 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 GPR52Q9Y2T5 361 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 SPACA6W5XKT8 324 aa14.39□□□□□ -0.11
CCDC40-202ENST00000374876 EFCAB7A8K855 629 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 H0YGG7 62 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 PLD2O14939 933 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 OR5F1O95221 314 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 NTN1O95631 604 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ACP2P11117 423 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ST6GAL1P15907 406 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ETV5P41161 510 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ETV1P50549 477 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ARF3P61204 181 aaPredicted RBP14.38□□□□□ -0.11
CCDC40-202ENST00000374876 GABREP78334 506 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 ID2Q02363 134 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 RAB40BQ12829 278 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 KCNAB1Q14722 419 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 LIPKQ5VXJ0 399 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 GDF7Q7Z4P5 450 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 MRGPREQ86SM8 312 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 NKAIN4Q8IVV8 208 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 AGBL5Q8NDL9 886 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 OSTF1Q92882 214 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 RNFT2Q96EX2 444 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 KCNS3Q9BQ31 491 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 LYRM4Q9HD34 91 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 IRAK4Q9NWZ3 460 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 SSR3Q9UNL2 185 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 UGT2A1Q9Y4X1 527 aa14.38□□□□□ -0.11
CCDC40-202ENST00000374876 TLCD2A6NGC4 264 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 JMJD7P0C870 316 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 FPR3P25089 353 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 STAT5AP42229 794 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CRYBB2P43320 205 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 MTNR1AP48039 350 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 GPR68Q15743 365 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 TRMT12Q53H54 448 aaKnown RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 EIPR1Q53HC9 387 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 STEAP3Q658P3 488 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 PRSS42Q7Z5A4 293 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 PHC2Q8IXK0 858 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 NRMQ8IXM6 262 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF655Q8N720 491 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CEP19Q96LK0 163 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 NRSN2Q9GZP1 204 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF768Q9H5H4 540 aaKnown RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 QPCTLQ9NXS2 382 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 MRPS2Q9Y399 296 aaKnown RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 HYKKA2RU49 373 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 WWP2O00308 870 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 TOX3O15405 576 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 TNFSF15O95150 251 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ANKRD34CP0C6C1 535 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 RPS19P39019 145 aaKnown RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 MINDY4Q4G0A6 757 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF628Q5EBL2 1059 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF836Q6ZNA1 936 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 MBOAT2Q6ZWT7 520 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 POC5Q8NA72 575 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ANKK1Q8NFD2 765 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 TOR1AIP2Q8NFQ8 470 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 PMEPA1Q969W9 287 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 RNF31Q96EP0 1072 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CD180Q99467 661 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 SDF2Q99470 211 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 PIGUQ9H490 435 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 SP140LQ9H930 580 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 ADAP2Q9NPF8 381 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 KRCC1Q9NPI7 259 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 MRPS18AQ9NVS2 196 aaKnown RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 AKAP7Q9P0M2 348 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 C19orf53Q9UNZ5 99 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CARD8Q9Y2G2 431 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CEP295Q9C0D2 2601 aa14.37□□□□□ -0.11
CCDC40-202ENST00000374876 CELSR3Q9NYQ7 3312 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 A0A075B6Q4 140 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 ZNF670-ZNF695F2Z2N8 137 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 LDB3O75112 727 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 APOL3O95236 402 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 NT5EP21589 574 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 GTF2E2P29084 291 aaKnown RBP14.36□□□□□ -0.11
CCDC40-202ENST00000374876 ETV6P41212 452 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 GPR4P46093 362 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 ARL4DP49703 201 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 WNT4P56705 351 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 SLC13A2Q13183 592 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 DUSP8Q13202 625 aa14.36□□□□□ -0.11
CCDC40-202ENST00000374876 CCNJQ5T5M9 372 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms