RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 EEF1A1P68104 462 aaKnown RBP16.5■□□□□ 0.23
CLN3-202ENST00000355477 SORDQ00796 357 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 ZNF141Q15928 474 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 EEF1A1P5Q5VTE0 462 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 OR10D3Q8NH80 312 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 XAGE5Q8WWM1 108 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 OR52B2Q96RD2 323 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 SLC35A5Q9BS91 424 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 ZNF350Q9GZX5 532 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 STOML1Q9UBI4 398 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 PRAMEF27A3QJZ7 478 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 SERINC4A6NH21 518 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 A6NNC1 897 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 TNFSF11O14788 317 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 MSTNO14793 375 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 CXCL13O43927 109 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 UGT2B17O75795 530 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 SMNDC1O75940 238 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-202ENST00000355477 NUDT14O95848 222 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 AK1P00568 194 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 EPXP11678 715 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 SHC1P29353 583 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 CDKN2CP42773 168 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 SIRPAP78324 504 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 FUT5Q11128 374 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 FOXF1Q12946 379 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 DAZAP2Q15038 168 aaPredicted RBP16.49■□□□□ 0.23
CLN3-202ENST00000355477 GUSBP1Q15486 140 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 MAPK14Q16539 360 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 ZNF474Q6S9Z5 364 aaPredicted RBP16.49■□□□□ 0.23
CLN3-202ENST00000355477 C16orf62Q7Z3J2 963 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 LILRA2Q8N149 483 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 RFWD2Q8NHY2 731 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 FBXO27Q8NI29 283 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 PIWIL2Q8TC59 973 aaKnown RBP16.49■□□□□ 0.23
CLN3-202ENST00000355477 ARSGQ96EG1 525 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 OR52E6Q96RD3 313 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 POLDIP3Q9BY77 421 aaKnown RBP16.49■□□□□ 0.23
CLN3-202ENST00000355477 OPN3Q9H1Y3 402 aaPredicted RBP16.49■□□□□ 0.23
CLN3-202ENST00000355477 RASSF1Q9NS23 344 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 EXD2Q9NVH0 621 aa16.49■□□□□ 0.23
CLN3-202ENST00000355477 CCDC154A6NI56 674 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 ZNF264O43296 627 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 EIF4E2O60573 245 aaKnown RBP16.48■□□□□ 0.23
CLN3-202ENST00000355477 CGAP01215 116 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 GSNP06396 782 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 UBL4AP11441 157 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 CHI3L1P36222 383 aaPredicted RBP16.48■□□□□ 0.23
CLN3-202ENST00000355477 EIF1P41567 113 aaKnown RBP16.48■□□□□ 0.23
CLN3-202ENST00000355477 SUMO3P55854 103 aaPredicted RBP16.48■□□□□ 0.23
CLN3-202ENST00000355477 FAM27E3Q08E93 113 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 TTMPQ5BVD1 217 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 TYW3Q6IPR3 259 aaKnown RBP16.48■□□□□ 0.23
CLN3-202ENST00000355477 PPP4R4Q6NUP7 873 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 RNF130Q86XS8 419 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 OR2V1Q8NHB1 315 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 ROPN1LQ96C74 230 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 ZG16BQ96DA0 208 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 ATP6V1G3Q96LB4 118 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 PANX1Q96RD7 426 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 PRR14LQ5THK1 2151 aa16.48■□□□□ 0.23
CLN3-202ENST00000355477 MED13LQ71F56 2210 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 HMGN4O00479 90 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 AGR2O95994 175 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 IDO1P14902 403 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 PRKCAP17252 672 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 ME2P23368 584 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 SFTPDP35247 375 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 CPOXP36551 454 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 PDCD4Q53EL6 469 aaKnown RBP16.47■□□□□ 0.23
CLN3-202ENST00000355477 ATAD3BQ5T9A4 648 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 AP1ARQ63HQ0 302 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 HBMQ6B0K9 141 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 ZNF621Q6ZSS3 439 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 ESPNLQ6ZVH7 1005 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 HMGN2P46Q86SG4 172 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 OR5W2Q8NH69 310 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 KLHL15Q96M94 604 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 ZBTB18Q99592 522 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 PRRG4Q9BZD6 226 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 LAT2Q9GZY6 243 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 CLEC4MQ9H2X3 399 aaPredicted RBP16.47■□□□□ 0.23
CLN3-202ENST00000355477 LIME1Q9H400 295 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 SLC6A13Q9NSD5 602 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 CLEC4AQ9UMR7 237 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 WDR45Q9Y484 360 aa16.47■□□□□ 0.23
CLN3-202ENST00000355477 GPC6Q9Y625 555 aaPredicted RBP16.47■□□□□ 0.23
CLN3-202ENST00000355477 KIAA0513O60268 411 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 DIAPH2O60879 1101 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 DNAJA2O60884 412 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 BCAS1O75363 584 aaPredicted RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 SLC22A3O75751 556 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 NTN1O95631 604 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 GUSBP08236 651 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 FCGR2AP12318 317 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 ADH6P28332 368 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 DNAJA1P31689 397 aaKnown RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 KHKP50053 298 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 CCR4P51679 360 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 CARD18P57730 90 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms