RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 RNF6Q9Y252 685 aa14.21□□□□□ -0.14
LIMS1-202ENST00000338045 PCDHGA3Q9Y5H0 932 aa14.21□□□□□ -0.14
LIMS1-202ENST00000338045 A0A1W2PQD3 144 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 PMS2P1A4D2B8 440 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 TMEM200CA6NKL6 621 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 ICOSLGO75144 302 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 SOX14O95416 240 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 DLGAP3O95886 979 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 HPGDP15428 266 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 GABRB1P18505 474 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 KRT20P35900 424 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 NDUFAF6Q330K2 333 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 SLX4IPQ5VYV7 408 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 NRMQ8IXM6 262 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 POGLUT1Q8NBL1 392 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF226Q9NYT6 803 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 PISDQ9UG56 409 aa14.2□□□□□ -0.14
LIMS1-202ENST00000338045 PTRH2Q9Y3E5 179 aaKnown RBP14.2□□□□□ -0.14
LIMS1-202ENST00000338045 CCDC187A0A096LP49 1063 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 A0A1W2PNU3 283 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-202ENST00000338045 OR6C70A6NIJ9 312 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 ALG1L2C9J202 215 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 PLD2O14939 933 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 OR6B1O95007 311 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 IGFBP1P08833 259 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-202ENST00000338045 CD63P08962 238 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 JMJD7P0C870 316 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 UBL4AP11441 157 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 ALDH3B2P48448 385 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 IDH2P48735 452 aaKnown RBP14.19□□□□□ -0.14
LIMS1-202ENST00000338045 SKP2Q13309 424 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 PCOLCEQ15113 449 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 FAM69BQ5VUD6 431 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 TMEM236Q5W0B7 351 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 C12orf73Q69YU5 71 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 DESI1Q6ICB0 168 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF773Q6PK81 442 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 DHRS13Q6UX07 377 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 RASSF6Q6ZTQ3 369 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 WDR36Q8NI36 951 aaKnown RBP14.19□□□□□ -0.14
LIMS1-202ENST00000338045 TMEM239Q8WW34 195 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 ARSGQ96EG1 525 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 FAM46AQ96IP4 442 aaKnown RBP14.19□□□□□ -0.14
LIMS1-202ENST00000338045 MPP4Q96JB8 637 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 HS6ST2Q96MM7 605 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 DEPDC7Q96QD5 511 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 RASSF1Q9NS23 344 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 AASSQ9UDR5 926 aa14.19□□□□□ -0.14
LIMS1-202ENST00000338045 TRBV11-1A0A0K0K1C0 115 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 A0A1W2PQ72 361 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PIP5K1CO60331 668 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CDK4P11802 303 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 POU1F1P28069 291 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 NRG3P56975 720 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CDC42P60953 191 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 TRIP6Q15654 476 aaKnown RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ULK3Q6PHR2 472 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 KIRREL2Q6UWL6 708 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 LINC00114Q6XXX2 140 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 KIF18BQ86Y91 864 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 BPIFB6Q8NFQ5 453 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 OR5L2Q8NGL0 311 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PHOSPHO1Q8TCT1 267 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 LIN28AQ9H9Z2 209 aaKnown RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 KRCC1Q9NPI7 259 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CNIH4Q9P003 139 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PADI1Q9ULC6 663 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 NPFFR2Q9Y5X5 522 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 WDFY3Q8IZQ1 3526 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PCNX2A6NKB5 2137 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 IGHV1-45A0A0A0MS14 117 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 C9orf172C9J069 976 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 H3BN98 237 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF264O43296 627 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 MPZL2O60487 215 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ZFAND5O76080 213 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 DKK1O94907 266 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 NADKO95544 446 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF24P17028 368 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 FMO3P31513 532 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 NBL1P41271 181 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 STAT5AP42229 794 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 RBM34P42696 430 aaKnown RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CSNK2BP67870 215 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CDK5Q00535 292 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PRKCDQ05655 676 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 C6orf15Q6UXA7 325 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 TIPARPQ7Z3E1 657 aaKnown RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 MEX3DQ86XN8 651 aaKnown RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 CCDC103Q8IW40 242 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 GATSQ8NAP1 163 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ELP5Q8TE02 316 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 LRFN3Q9BTN0 628 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 RTN4RQ9BZR6 473 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 FAM192AQ9GZU8 254 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 ZNF700Q9H0M5 742 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 DUSP21Q9H596 190 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 POLR1BQ9H9Y6 1135 aa14.18□□□□□ -0.14
LIMS1-202ENST00000338045 PAK1IP1Q9NWT1 392 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-202ENST00000338045 IMPAD1Q9NX62 359 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms