RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 REEP3Q6NUK4 255 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF836Q6ZNA1 936 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 NCCRP1Q6ZVX7 275 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PTOV1Q86YD1 416 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CMIPQ8IY22 773 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 EID3Q8N140 333 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 METTL25Q8N6Q8 603 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 FAM71CQ8NEG0 241 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 OR8J3Q8NGG0 315 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 OR10A6Q8NH74 314 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 GPR119Q8TDV5 335 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CNOT9Q92600 299 aaKnown RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ZBTB8AQ96BR9 441 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 LRRC37BQ96QE4 947 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PRDM14Q9GZV8 571 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PIF1Q9H611 641 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 BCL2L10Q9HD36 194 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF443Q9Y2A4 671 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 MEMO1Q9Y316 297 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 GTF3C1Q12789 2109 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CLEC18AA5D8T8 446 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 H3BML4 177 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 WDR1O75083 606 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF17P17021 662 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 POU3F2P20265 443 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ACVR2AP27037 513 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 AQP1P29972 269 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PRDX6P30041 224 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 LHX2P50458 406 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 NUDT2P50583 147 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PLAURQ03405 335 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 SRYQ05066 204 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 FOXF1Q12946 379 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 LARS2Q15031 903 aaKnown RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 TOMM34Q15785 309 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 MRPL2Q5T653 305 aaKnown RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CLEC18BQ6UXF7 455 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 SERPINA11Q86U17 422 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PM20D2Q8IYS1 436 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ULK2Q8IYT8 1036 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 RPRMLQ8N4K4 120 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ANKS4BQ8N8V4 417 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CLEC18CQ8NCF0 446 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 C11orf65Q8NCR3 313 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CCDC197Q8NCU1 140 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 SMPDL3BQ92485 455 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 WDYHV1Q96HA8 205 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CCDC120Q96HB5 630 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 RNF145Q96MT1 663 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 NPAS1Q99742 590 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ECSITQ9BQ95 431 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 EFCAB1Q9HAE3 211 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 DNAJB12Q9NXW2 375 aaKnown RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ANGPT4Q9Y264 503 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF337Q9Y3M9 751 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PCNX3Q9H6A9 2034 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 HIVEP3Q5T1R4 2406 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 E9PLN8 166 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 H0Y3Z8 333 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 LINGO3P0C6S8 592 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 PGCP20142 388 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 RYKP34925 604 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 RBBP4Q09028 425 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 ART3Q13508 389 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 QPRTQ15274 297 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 TMEM44Q2T9K0 475 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF311Q5JNZ3 666 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 C1orf185Q5T7R7 199 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 NET1Q7Z628 596 aaPredicted RBP14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 KRT73Q86Y46 540 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 ZZZ3Q8IYH5 903 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 UBQLNLQ8IYU4 475 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 GTPBP8Q8N3Z3 284 aaPredicted RBP14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 HIPK4Q8NE63 616 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 VKORC1Q9BQB6 163 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 EXOSC3Q9NQT5 275 aaKnown RBP14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF232Q9UNY5 417 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 IFT52Q9Y366 437 aa14.37□□□□□ -0.11
CCDC28A-201ENST00000332797 C7orf72A4D263 438 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 LINC01387J3KSC0 135 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 LDLRP01130 860 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 THBS1P07996 1170 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 PABPC4LP0CB38 370 aaKnown RBP14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 RNF224P0DH78 156 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 PEPDP12955 493 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 GABRA1P14867 456 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 ETS2P15036 469 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 ZNF708P17019 499 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 CLDN18P56856 261 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 EEF1A1P68104 462 aaKnown RBP14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 RNF220Q5VTB9 566 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 MTFR2Q6P444 385 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 FBXO27Q8NI29 283 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 POC1BQ8TC44 478 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 SSC4DQ8WTU2 575 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 DMRTA2Q96SC8 542 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 SPATA9Q9BWV2 254 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 RLIMQ9NVW2 624 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 FAM215AQ9Y5M1 114 aa14.36□□□□□ -0.11
CCDC28A-201ENST00000332797 GPC6Q9Y625 555 aaPredicted RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms