RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CDHR4A6H8M9 788 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TBC1D3BA6NDS4 549 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TBC1D3FA6NER0 549 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PRRG1O14668 218 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NDUFS4O43181 175 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 MTX2O75431 263 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 C1orf105O95561 183 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GBAP04062 536 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CKMP06732 381 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ATF1P18846 271 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 WEE1P30291 646 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 BSGP35613 385 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC11A1P49279 550 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CCR6P51684 374 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC6A19Q695T7 634 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TBC1D3GQ6DHY5 549 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 VASNQ6EMK4 673 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 Q6ZNB5 142 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 DPPA4Q7L190 304 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 LINGO2Q7L985 606 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TRMT11Q7Z4G4 463 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PNPLA2Q96AD5 504 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 C10orf90Q96M02 699 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GPA33Q99795 319 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GINS4Q9BRT9 223 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC35C2Q9NQQ7 365 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 OR6C2Q9NZP2 312 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CNIH4Q9P003 139 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ZNF646O15015 1829 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PQLC2LA1A4F0 135 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PCP4L1A6NKN8 68 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ARPC5O15511 151 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NCR1O76036 304 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PAK4O96013 591 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CALCBP10092 127 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CST5P28325 142 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 LMAN2Q12907 356 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC9A5Q14940 896 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PABPC1L2AQ5JQF8 200 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 UBE2NLQ5JXB2 153 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 C11orf88Q6PI97 169 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 FAM122BQ7Z309 247 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 KIAA0907Q7Z7F0 614 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 APCDD1Q8J025 514 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GANCQ8TET4 914 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TCEAL7Q9BRU2 100 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 MTHFD2LQ9H903 347 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GPR34Q9UPC5 381 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 RAB19A4D1S5 217 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 A8MUA0 341 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 A8MX80 341 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 F5H5P2 479 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SEPT4O43236 478 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 S100A8P05109 93 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 STARP49675 285 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SGSHP51688 502 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 STK11Q15831 433 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ARHGAP11AQ6P4F7 1023 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 OR4C6Q8NH72 309 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 COQ8AQ8NI60 647 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GHSRQ92847 366 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 RBM18Q96H35 190 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TEAD3Q99594 435 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CDC6Q99741 560 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLAMF7Q9NQ25 335 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SIRT3Q9NTG7 399 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 HPF1Q9NWY4 346 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 KCMF1Q9P0J7 381 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ZNF69Q9UC07 566 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 CDV3Q9UKY7 258 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 FNDC1Q4ZHG4 1894 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 FXYD6-FXYD2A0A087WZ82 144 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TSPAN11A1L157 253 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 RBBP9O75884 186 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 AK1P00568 194 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 MT-ND4P03905 459 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 OR2T7P0C7T2 308 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 MGMTP16455 207 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ERVFC1P60507 584 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 EIF5AP63241 154 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 TAF1CQ15572 869 aaPredicted RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 C9orf64Q5T6V5 341 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SEZ6L2Q6UXD5 910 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 OR2T27Q8NH04 317 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 FXYD6Q9H0Q3 95 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC6A20Q9NP91 592 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SEMA4GQ9NTN9 838 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PIPOXQ9P0Z9 390 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ASF1AQ9Y294 204 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 ANXA2P2A6NMY6 339 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 PLPP1O14494 284 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 GNB5O14775 395 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NPC1O15118 1278 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 OR2F2O95006 317 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NT5EP21589 574 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 SLC6A6P31641 620 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 MPIP34949 423 aa4.45□□□□□ -1.7
PTPN13-201ENST00000316707 RBM34P42696 430 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NR0B1P51843 470 aaKnown RBP4.45□□□□□ -1.7
PTPN13-201ENST00000316707 NCBP2P52298 156 aaKnown RBP eCLIP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms