RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ZFP82Q8N141 532 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 LMNTD1Q8N9Z9 388 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 OR4D10Q8NGI6 311 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 SMPDL3AQ92484 453 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 FNDC11Q9BVV2 318 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 ACTR6Q9GZN1 396 aa10.19□□□□□ -0.78
LSM3-201ENST00000306024 SLC22A23A1A5C7 686 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 AGAP14A8MT82 685 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 LAMP1P11279 417 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 OSMP13725 252 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 NDUFS1P28331 727 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 HAAOP46952 286 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 YPEL5P62699 121 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 GK2Q14410 553 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 LPAL2Q16609 132 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 ZCCHC12Q6PEW1 402 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 UBE2E3Q969T4 207 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 NKX6-2Q9C056 277 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 SPINT1O43278 529 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 PRKYO43930 277 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLCO2B1O94956 709 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 MPC2O95563 127 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 FABP1P07148 127 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 PTPN6P29350 595 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 CSNK1EP49674 416 aaKnown RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 ETFDHQ16134 617 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 ZNF791Q3KP31 576 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 CLEC12AQ5QGZ9 265 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 OR4K1Q8NGD4 311 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 CMTM7Q96FZ5 175 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 ARL5BQ96KC2 179 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SECISBP2Q96T21 854 aaKnown RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 TBX5Q99593 518 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLC38A3Q99624 504 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLC35A5Q9BS91 424 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 CRB3Q9BUF7 120 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 DNTTIP1Q9H147 329 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 CHRDQ9H2X0 955 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 STOX2Q9P2F5 926 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 ZNF282Q9UDV7 671 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLC23A2Q9UGH3 650 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 TRPS1Q9UHF7 1281 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 RPS10-NUDT3A0A1W2PQS6 291 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLC28A2O43868 658 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 PCDH7O60245 1069 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 LGI1O95970 557 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SERPINA3P01011 423 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 RLN2P04090 185 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 ELK1P19419 428 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 NFYAP23511 347 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 ARRB1P49407 418 aaPredicted RBP10.18□□□□□ -0.78
LSM3-201ENST00000306024 CENPAP49450 140 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 PNLIPRP1P54315 467 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SMIM11AP58511 58 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 KCNJ10P78508 379 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 PITPNAQ00169 270 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 ARL9Q6T311 187 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 KLHL36Q8N4N3 616 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 OR2T4Q8NH00 348 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 AIF1LQ9BQI0 150 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 TIMM29Q9BSF4 260 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 MIEF1Q9NQG6 463 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 TMEM184CQ9NVA4 438 aa10.18□□□□□ -0.78
LSM3-201ENST00000306024 SLC5A10A0PJK1 596 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 LRRN3E7EW58 273 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 LRRTM2O43300 516 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 CH25HO95992 272 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 H1F0P07305 194 aaKnown RBP10.17□□□□□ -0.78
LSM3-201ENST00000306024 IGFBP1P08833 259 aaPredicted RBP10.17□□□□□ -0.78
LSM3-201ENST00000306024 CBR1P16152 277 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 TBPL1P62380 186 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 SPIN4Q56A73 249 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ZNF628Q5EBL2 1059 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 C6orf132Q5T0Z8 1188 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 UNC5DQ6UXZ4 953 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ZER1Q7Z7L7 766 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ZDHHC1Q8WTX9 485 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ADAMTS14Q8WXS8 1223 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ACOT12Q8WYK0 555 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ATOH1Q92858 354 aaPredicted RBP10.17□□□□□ -0.78
LSM3-201ENST00000306024 CCDC3Q9BQI4 270 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 TEX101Q9BY14 249 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 LRRN3Q9H3W5 708 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ZFP64Q9NPA5 681 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 MRTO4Q9UKD2 239 aaKnown RBP10.17□□□□□ -0.78
LSM3-201ENST00000306024 POMT2Q9UKY4 750 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 GPR52Q9Y2T5 361 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 ENPP4Q9Y6X5 453 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 OR14I1A6ND48 311 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 TUBAL3A6NHL2 446 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 SGK494L7N484 410 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 TO15178 435 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 SIGLEC5O15389 551 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 PSMA3P25788 255 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 HSD17B2P37059 387 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 SIGLEC14Q08ET2 396 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 SLBPQ14493 270 aaKnown RBP eCLIP10.17□□□□□ -0.78
LSM3-201ENST00000306024 RGNQ15493 299 aa10.17□□□□□ -0.78
LSM3-201ENST00000306024 CCSMST1Q4G0I0 132 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms