RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 FOXF1Q12946 379 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 GLYR1Q49A26 553 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 GCNT6Q5T4J0 391 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 REP15Q6BDI9 236 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 HIST2H2BCQ6DN03 193 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 TMEM211Q6ICI0 200 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 CPLX4Q7Z7G2 160 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 MTDHQ86UE4 582 aaKnown RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 LSRQ86X29 649 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 VRK2Q86Y07 508 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 CCDC71Q8IV32 467 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 GTPBP8Q8N3Z3 284 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 ZNF808Q8N4W9 903 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 POU5F2Q8N7G0 328 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 FAM71CQ8NEG0 241 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 OR10Q1Q8NGQ4 319 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 OR5W2Q8NH69 310 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 NFKBIDQ8NI38 313 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 GPR119Q8TDV5 335 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 SDCCAG3Q96C92 435 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 TREX2Q9BQ50 279 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 SLC39A3Q9BRY0 314 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 THUMPD3Q9BV44 507 aaKnown RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 LAT2Q9GZY6 243 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 NSRP1Q9H0G5 558 aaKnown RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 MTHFD2LQ9H903 347 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 A4GALTQ9NPC4 353 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 GMEB1Q9Y692 573 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 NCOA6Q14686 2063 aaPredicted RBP12.07□□□□□ -0.48
VPS28-201ENST00000292510 DSPPQ9NZW4 1301 aa12.07□□□□□ -0.48
VPS28-201ENST00000292510 TMEM247A6NEH6 219 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 EVPLLA8MZ36 301 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 SNX3O60493 162 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ADAM11O75078 769 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ARAFP10398 606 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 PEPDP12955 493 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ZNF17P17021 662 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 GPX2P18283 190 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 RPS4Y1P22090 263 aaKnown RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 PPIBP23284 216 aaKnown RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 PSMA4P25789 261 aaKnown RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 SUMO3P55854 103 aaPredicted RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 KCNJ10P78508 379 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 QPRTQ15274 297 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 MAPRE2Q15555 327 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 MMEL1Q495T6 779 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ZNF836Q6ZNA1 936 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 TREML1Q86YW5 311 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 TOR1AIP2Q8NFQ8 470 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 TNIP2Q8NFZ5 429 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 OR52P1PQ8NH57 321 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 FBXO27Q8NI29 283 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 WDR60Q8WVS4 1066 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 CNOT9Q92600 299 aaKnown RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 RND1Q92730 232 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ZBTB8AQ96BR9 441 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 ANKRD27Q96NW4 1050 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 TMEM185BQ9H7F4 350 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 MRGBPQ9NV56 204 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 THUMPD1Q9NXG2 353 aaKnown RBP12.06□□□□□ -0.48
VPS28-201ENST00000292510 CALML5Q9NZT1 146 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 RNF6Q9Y252 685 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 SLC35A3Q9Y2D2 325 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 KIAA1549Q9HCM3 1950 aa12.06□□□□□ -0.48
VPS28-201ENST00000292510 A0A0G2JNJ9 132 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 A0A0G2JPF8 293 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 C7orf72A4D263 438 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 CLCA1A8K7I4 914 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 HNRNPCL2B2RXH8 293 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 HNRNPCL3B7ZW38 293 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 C5orf58C9J3I9 102 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 FXYD1O00168 92 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 MRASO14807 208 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 EFNA2O43921 213 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 HNRNPCL1O60812 293 aaKnown RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 CCDC22O60826 627 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 TOXO94900 526 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 EPPINO95925 133 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 DBIP07108 87 aaKnown RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 HOXD4P09016 255 aaPredicted RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 HNRNPCL4P0DMR1 293 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 IL7RP16871 459 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 PRKCAP17252 672 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 COL8A1P27658 744 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 ADSLP30566 484 aaPredicted RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 RYKP34925 604 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 PTGER4P35408 488 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 CBFBQ13951 182 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 CYLC2Q14093 348 aaPredicted RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 ADRM1Q16186 407 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 BCL2A1Q16548 175 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 TRMT5Q32P41 509 aaKnown RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 MRPL2Q5T653 305 aaKnown RBP12.05□□□□□ -0.48
VPS28-201ENST00000292510 NSUN5P2Q63ZY6 315 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 GGNQ86UU5 652 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 PEX5LQ8IYB4 626 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 NAXEQ8NCW5 288 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 ZPLD1Q8TCW7 415 aa12.05□□□□□ -0.48
VPS28-201ENST00000292510 OIT3Q8WWZ8 545 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms