RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PCDHGA6Q9Y5G7 932 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 GMPPBQ9Y5P6 360 aa12.95□□□□□ -0.34
SS18-201ENST00000269137 CFAP54Q96N23 3096 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 A0A1B0GWA3 101 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 TERTO14746 1132 aaKnown RBP12.94□□□□□ -0.34
SS18-201ENST00000269137 ZNF264O43296 627 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 FADS1O60427 444 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 CEACAM1P13688 526 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 OSMP13725 252 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 LSM11P83369 360 aaKnown RBP eCLIP12.94□□□□□ -0.34
SS18-201ENST00000269137 SKP2Q13309 424 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 RAPSNQ13702 412 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 BTBD16Q32M84 506 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 DESI1Q6ICB0 168 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 TTC33Q6PID6 262 aaPredicted RBP12.94□□□□□ -0.34
SS18-201ENST00000269137 C16orf47Q6ZP98 133 aaPredicted RBP12.94□□□□□ -0.34
SS18-201ENST00000269137 RRM2BQ7LG56 351 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 PPP1R32Q7Z5V6 425 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 POGLUT1Q8NBL1 392 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 PIGXQ8TBF5 258 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 PHOSPHO1Q8TCT1 267 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 MPP4Q96JB8 637 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 APOL4Q9BPW4 351 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 LAT2Q9GZY6 243 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 CEP250Q9BV73 2442 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 EXPH5Q8NEV8 1989 aa12.94□□□□□ -0.34
SS18-201ENST00000269137 PTPRZ1P23471 2315 aaPredicted RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 GTPBP1O00178 669 aaKnown RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 WWP2O00308 870 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 CHP2O43745 196 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 EIF4E2O60573 245 aaKnown RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 ZNF354AO60765 605 aaPredicted RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 GSTM3P21266 225 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 STAT5AP42229 794 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 OMPP47874 163 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 TPD52P55327 224 aaPredicted RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 ALDH6A1Q02252 535 aaKnown RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 DNASE1L3Q13609 305 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 NDUFAF6Q330K2 333 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 SLC15A4Q8N697 577 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 GNPDA2Q8TDQ7 276 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 THAP3Q8WTV1 239 aaPredicted RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 TTC9Q92623 222 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 HS6ST2Q96MM7 605 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 ING2Q9H160 280 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 POLR1BQ9H9Y6 1135 aa12.93□□□□□ -0.34
SS18-201ENST00000269137 ZBTB20Q9HC78 741 aaPredicted RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 RYDENQ9NUL5 291 aaKnown RBP12.93□□□□□ -0.34
SS18-201ENST00000269137 NSG1A0A0A6YYJ2 146 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TRIM64A6NGJ6 449 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 CHMP24386 653 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 EVI2BP34910 448 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 GGT2P36268 569 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 GSSP48637 474 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 CRISP1P54107 249 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 NUP107P57740 925 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 RPS18P62269 152 aaKnown RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 CD47Q08722 323 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TSPAN31Q12999 210 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 KCTD21Q4G0X4 260 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 ULK3Q6PHR2 472 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 WDR88Q6ZMY6 472 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 ASCL5Q7RTU5 278 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 NUP54Q7Z3B4 507 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 PRICKLE2Q7Z3G6 844 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 ZNF786Q8N393 782 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 GATSQ8NAP1 163 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 SLC22A8Q8TCC7 542 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TMEM255BQ8WV15 326 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 RNF138Q8WVD3 245 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 DNAJA4Q8WW22 397 aaPredicted RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 TMEM239Q8WW34 195 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 HGDQ93099 445 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 GPA33Q99795 319 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 ZNF426Q9BUY5 554 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TBL1XR1Q9BZK7 514 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 KRCC1Q9NPI7 259 aaPredicted RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 ZAR1LA6NP61 321 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 STMND1H3BQB6 276 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 KLF4O43474 513 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 OIP5O43482 229 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 NDUFB5O43674 189 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 RAD1O60671 282 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TP53P04637 393 aaPredicted RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 ICAM2P13598 275 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 FPR3P25089 353 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 CD82P27701 267 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 RBM34P42696 430 aaKnown RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 SLC6A8P48029 635 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 TMED10P49755 219 aaKnown RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 COPZ1P61923 177 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 PTGES3Q15185 160 aaKnown RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 LYPD8Q6UX82 237 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 LINC00114Q6XXX2 140 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 CCDC71Q8IV32 467 aaPredicted RBP12.92□□□□□ -0.34
SS18-201ENST00000269137 MISPQ8IVT2 679 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 NRMQ8IXM6 262 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 ARMC10Q8N2F6 343 aa12.92□□□□□ -0.34
SS18-201ENST00000269137 HDAC2Q92769 488 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms