RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 GSDMCQ9BYG8 508 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 RBCK1Q9BYM8 510 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 IGFLR1Q9H665 355 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 LIPT1Q9Y234 373 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 ZNF443Q9Y2A4 671 aaPredicted RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 COL4A6Q14031 1691 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 SNRNP200O75643 2136 aaKnown RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 PEX12O00623 359 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 DNAJB6O75190 326 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 TRAPPC2P0DI81 140 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 TRAPPC2BP0DI82 140 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 HLA-DMAP28067 261 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 HTR1FP30939 366 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 CCR6P51684 374 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 EXOSC7Q15024 291 aaKnown RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 DUSP5Q16690 384 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 SLC25A35Q3KQZ1 300 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 FAM78AQ5JUQ0 283 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 CD300LDQ6UXZ3 194 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 KIAA0907Q7Z7F0 614 aaPredicted RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 RANBP3LQ86VV4 465 aaPredicted RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 GJD3Q8N144 294 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 ZMYND19Q96E35 227 aaPredicted RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 MED18Q9BUE0 208 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 B3GNT4Q9C0J1 378 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 ACOXLQ9NUZ1 547 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 MARK1Q9P0L2 795 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 ADAM29Q9UKF5 820 aa11.77□□□□□ -0.53
LIG1-201ENST00000263274 ZNF106Q9H2Y7 1883 aaKnown RBP11.77□□□□□ -0.53
LIG1-201ENST00000263274 WDR87Q6ZQQ6 2873 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 CXorf51AA0A1B0GTR3 108 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SLC9B1P1A6NJY1 282 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 DUXAA6NLW8 204 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 OR7A10O76100 309 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 PPP1R3DO95685 299 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GNRH1P01148 92 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 FRKP42685 505 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 RGS1Q08116 209 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SFRP4Q6FHJ7 346 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 MBOAT2Q6ZWT7 520 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GLRX5Q86SX6 157 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 YAF2Q8IY57 180 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SHISA5Q8N114 240 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GON7Q9BXV9 100 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SIDT1Q9NXL6 827 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 AK6Q9Y3D8 172 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 A0A0A6YYJ9 748 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 RIIAD1A6NNX1 92 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SLC19A2O60779 497 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 FPR3P25089 353 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GRPRP30550 384 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 PITPNBP48739 271 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 AGFG1P52594 562 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 CLDN20P56880 219 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SUZ12Q15022 739 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 CST6Q15828 149 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 NNATQ16517 81 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 TMEM52BQ4KMG9 183 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 ZNF836Q6ZNA1 936 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SLC51BQ86UW2 128 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SERPINA12Q8IW75 414 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 LRRC25Q8N386 305 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 OR4K14Q8NGD5 310 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 HMGB4Q8WW32 186 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GIMAP1Q8WWP7 306 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 GCDHQ92947 438 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 CHFRQ96EP1 664 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 DNAJA3Q96EY1 480 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 CACNG6Q9BXT2 260 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 CCDC86Q9H6F5 360 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 MTHFD2LQ9H903 347 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 SYNPO2LQ9H987 977 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 IL20Q9NYY1 176 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SLC23A1Q9UHI7 598 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SPATA2Q9UM82 520 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 TEX13CA0A0J9YWL9 993 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 A0A1W2PQU0 124 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 ATP6V1G2-DDX39BF2Z307 99 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MT-ND5P03915 603 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 PEPDP12955 493 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MAKP20794 623 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 TLX1P31314 330 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 RPL4P36578 427 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 FGFBP1Q14512 234 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 COL19A1Q14993 1142 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 PDGFRLQ15198 375 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MAPK14Q16539 360 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 DUSP6Q16828 381 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 ACSM3Q53FZ2 586 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MRPL2Q5T653 305 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 LYPD4Q6UWN0 246 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 IDO2Q6ZQW0 420 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MEPCEQ7L2J0 689 aaKnown RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 NR2C2APQ86WQ0 139 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 TMEM151BQ8IW70 566 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SLC44A3Q8N4M1 653 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 POGLUT1Q8NBL1 392 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 UXS1Q8NBZ7 420 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 OR4K13Q8NH42 304 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 LILRB1Q8NHL6 650 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms