RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	TAF11	Q15544	211 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	OR1Q1	Q15612	314 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	RFX4	Q33E94	735 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CMPK2	Q5EBM0	449 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	DCST1	Q5T197	706 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	H3F3C	Q6NXT2	135 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	JMJD6	Q6NYC1	403 aa	Predicted RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	FAHD1	Q6P587	224 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	OPN5	Q6U736	354 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	LYPD8	Q6UX82	237 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	APOOL	Q6UXV4	268 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PLEKHM3	Q6ZWE6	761 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	RPS19BP1	Q86WX3	136 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	DND1	Q8IYX4	353 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	POGLUT1	Q8NBL1	392 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	FAM71C	Q8NEG0	241 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PHOSPHO1	Q8TCT1	267 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	HGD	Q93099	445 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	RASL10B	Q96S79	203 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	BARD1	Q99728	777 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	FUZ	Q9BT04	418 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	PRR14	Q9BWN1	585 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	OSBPL11	Q9BXB4	747 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	TBL1XR1	Q9BZK7	514 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	LAT2	Q9GZY6	243 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	CDCP1	Q9H5V8	836 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	TMEM27	Q9HBJ8	222 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	EXOSC3	Q9NQT5	275 aa	Known RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	SMPD3	Q9NY59	655 aa	Predicted RBP	10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	ORC6	Q9Y5N6	252 aa		10.8	□□□□□ -0.68
CLN6-223	ENST00000637823	TRABD2B	A6NFA1	517 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	FAAH	O00519	579 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	DLGAP1	O14490	977 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	TP53I11	O14683	189 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF264	O43296	627 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	NDUFB5	O43674	189 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	BCAS1	O75363	584 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ITGA10	O75578	1167 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	UBTFL6	P0CB48	400 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	LIF	P15018	202 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ELAVL4	P26378	380 aa	Known RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	HTR2A	P28223	471 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	EVI2B	P34910	448 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	RNF144A	P50876	292 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	DAP	P51397	102 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	RAD23A	P54725	363 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	FBXW4	P57775	412 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823		Q0VFX4	171 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	EPS8	Q12929	822 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ATP1A4	Q13733	1029 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	LAPTM4A	Q15012	233 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	TGIF1	Q15583	401 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	NTRK2	Q16620	822 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF791	Q3KP31	576 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	FGD3	Q5JSP0	725 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	KDM4D	Q6B0I6	523 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	DESI1	Q6ICB0	168 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	PODNL1	Q6PEZ8	512 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ZNF613	Q6PF04	617 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	GDF7	Q7Z4P5	450 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	MARCH3	Q86UD3	253 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	TSPYL5	Q86VY4	417 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	MISP	Q8IVT2	679 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC5A8	Q8N695	610 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	LSMEM1	Q8N8F7	131 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	OR10G2	Q8NGC3	310 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	ADAMTS16	Q8TE57	1224 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC38A4	Q969I6	547 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	NXPE2	Q96DL1	559 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	SPACA9	Q96E40	222 aa	Predicted RBP	10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC41A3	Q96GZ6	507 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	FEV	Q99581	238 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823		Q9H521	79 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	HHATL	Q9HCP6	504 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	MAN2C1	Q9NTJ4	1040 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	NTNG1	Q9Y2I2	539 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	MED13	Q9UHV7	2174 aa		10.79	□□□□□ -0.68
CLN6-223	ENST00000637823	TRBV4-1	A0A0J9YWV2	114 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	SH3PXD2B	A1X283	911 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	DENR	O43583	198 aa	Known RBP	10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	ANGPTL1	O95841	491 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	LINGO3	P0C6S8	592 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	CDH2	P19022	906 aa	Predicted RBP	10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	FUT4	P22083	530 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC6A8	P48029	635 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	SSR4	P51571	173 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	RPP38	P78345	283 aa	Known RBP	10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	SKP2	Q13309	424 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	CD226	Q15762	336 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	NHSL2	Q5HYW2	709 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	DHRSX	Q8N5I4	330 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	ATG16L2	Q8NAA4	619 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	GATS	Q8NAP1	163 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	OR5M3	Q8NGP4	307 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	SLC7A13	Q8TCU3	470 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	GRHL3	Q8TE85	626 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	RNF138	Q8WVD3	245 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	ASB15	Q8WXK1	588 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	FER1L6-AS2	Q96M78	137 aa		10.78	□□□□□ -0.68
CLN6-223	ENST00000637823	NODAL	Q96S42	347 aa		10.78	□□□□□ -0.68

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