RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KISS1RQ969F8 398 aaPredicted RBP17.24■□□□□ 0.35
CLN3-262ENST00000637699 OTUB1Q96FW1 271 aaPredicted RBP17.24■□□□□ 0.35
CLN3-262ENST00000637699 TIGARQ9NQ88 270 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 UBQLN4Q9NRR5 601 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 KLHL13Q9P2N7 655 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 NBEAL1Q6ZS30 2694 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 DPRXA6NFQ7 191 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 A8MV72 311 aaPredicted RBP17.23■□□□□ 0.35
CLN3-262ENST00000637699 GOLGA8RI6L899 631 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 SCDO00767 359 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 LINGO3P0C6S8 592 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 PRIM2P49643 509 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 FOXF1Q12946 379 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 CD226Q15762 336 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 DUSP5Q16690 384 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 CCNJQ5T5M9 372 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 DNM1P46Q6ZS02 220 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 TRIM46Q7Z4K8 759 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 OR6Y1Q8NGX8 325 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 FAM110BQ8TC76 370 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 CPNE4Q96A23 557 aaPredicted RBP17.23■□□□□ 0.35
CLN3-262ENST00000637699 C16orf58Q96GQ5 468 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 TRIM2Q9C040 744 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 ALG2Q9H553 416 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 ALPK2Q86TB3 2170 aa17.23■□□□□ 0.35
CLN3-262ENST00000637699 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 EFNA2O43921 213 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 SSX4O60224 188 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 GPRIN2O60269 458 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 RAMP1O60894 148 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 SEC22BO75396 215 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 CRCPO75575 148 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 RSL1D1O76021 490 aaKnown RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 PRKD3O94806 890 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 CD8AP01732 235 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 FESP07332 822 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 THBS1P07996 1170 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 PTNP21246 168 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 GCAP28676 217 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 MANFP55145 182 aaKnown RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 ITGADQ13349 1161 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 DNAJC14Q6Y2X3 702 aaPredicted RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 FCRLAQ7L513 359 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 BHLHA15Q7RTS1 189 aaPredicted RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 LCA5Q86VQ0 697 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 MISPQ8IVT2 679 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 ATP6V1C2Q8NEY4 427 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 GIMAP5Q96F15 307 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 TRAF4Q9BUZ4 470 aaPredicted RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 POTEKPQ9BYX7 375 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 LRTM1Q9HBL6 345 aa17.22■□□□□ 0.35
CLN3-262ENST00000637699 BARX1Q9HBU1 254 aaPredicted RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 RRAGDQ9NQL2 400 aaPredicted RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 CISD1Q9NZ45 108 aaKnown RBP17.22■□□□□ 0.35
CLN3-262ENST00000637699 ZNF814B7Z6K7 855 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 ZNF195O14628 629 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 AKAP10O43572 662 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 NUDT14O95848 222 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 YES1P07947 543 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 GSTA1P08263 222 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 ALOX5P09917 674 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 EIF1P41567 113 aaKnown RBP17.21■□□□□ 0.35
CLN3-262ENST00000637699 RNF144AP50876 292 aaPredicted RBP17.21■□□□□ 0.35
CLN3-262ENST00000637699 C21orf58P58505 322 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 P2RY6Q15077 328 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 STK11Q15831 433 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 TMEM176BQ3YBM2 270 aaPredicted RBP17.21■□□□□ 0.35
CLN3-262ENST00000637699 ZNF385BQ569K4 471 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 SEZ6L2Q6UXD5 910 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 COX18Q8N8Q8 333 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 ZFP28Q8NHY6 868 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 FBXO27Q8NI29 283 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 MS4A4EQ96PG1 132 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 RHNO1Q9BSD3 238 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 IQCGQ9H095 443 aaKnown RBP17.21■□□□□ 0.35
CLN3-262ENST00000637699 SH3BP4Q9P0V3 963 aa17.21■□□□□ 0.35
CLN3-262ENST00000637699 IGHV4-30-2A0A087WSY4 118 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 IGHV3-15A0A0B4J1V0 119 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 PHF1O43189 567 aaPredicted RBP17.2■□□□□ 0.34
CLN3-262ENST00000637699 LYZL6O75951 148 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 ENPP1P22413 925 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 SERPINB4P48594 390 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 ZNF117Q03924 483 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 KIAA0040Q15053 153 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 IFT20Q8IY31 132 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 PHOSPHO1Q8TCT1 267 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 JADE3Q92613 823 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 PPCDCQ96CD2 204 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 CHMP6Q96FZ7 201 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 USB1Q9BQ65 265 aaKnown RBP17.2■□□□□ 0.34
CLN3-262ENST00000637699 RHOXF2Q9BQY4 288 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 GP6Q9HCN6 339 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 TNFRSF12AQ9NP84 129 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 NTMQ9P121 344 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 CCL27Q9Y4X3 112 aa17.2■□□□□ 0.34
CLN3-262ENST00000637699 A0A1W2PQD3 144 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 C9JVG2 144 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 OIP5O43482 229 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 FAM153BP0C7A2 387 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 PYGBP11216 843 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms