RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 CDS1Q92903 461 aa16.5■□□□□ 0.23
CLN6-220ENST00000637450 PERPQ96FX8 193 aa16.5■□□□□ 0.23
CLN6-220ENST00000637450 PPP3R2Q96LZ3 170 aa16.5■□□□□ 0.23
CLN6-220ENST00000637450 Q96MF0 132 aa16.5■□□□□ 0.23
CLN6-220ENST00000637450 EML4Q9HC35 981 aaKnown RBP16.5■□□□□ 0.23
CLN6-220ENST00000637450 FANCFQ9NPI8 374 aa16.5■□□□□ 0.23
CLN6-220ENST00000637450 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.49■□□□□ 0.23
CLN6-220ENST00000637450 H7C1Q1 480 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 EFNA2O43921 213 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 LY6G6DO95868 133 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 LAMP1P11279 417 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 NID1P14543 1247 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 MAPK1P28482 360 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 HPCAL1P37235 193 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 RPL3P39023 403 aaKnown RBP16.49■□□□□ 0.23
CLN6-220ENST00000637450 CDC73Q6P1J9 531 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 PLEKHM3Q6ZWE6 761 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 MTERF4Q7Z6M4 381 aaKnown RBP16.49■□□□□ 0.23
CLN6-220ENST00000637450 PSMA8Q8TAA3 256 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 IGFBPL1Q8WX77 278 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.49■□□□□ 0.232e-7■■■■■ 68.1
CLN6-220ENST00000637450 APOPT1Q96IL0 206 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 KLHL15Q96M94 604 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 BDH2Q9BUT1 245 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 GSX2Q9BZM3 304 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 HOXD1Q9GZZ0 328 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 OR10A4Q9H209 315 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 GIMAP2Q9UG22 337 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 GPR52Q9Y2T5 361 aa16.49■□□□□ 0.23
CLN6-220ENST00000637450 FN1P02751 2386 aaKnown RBP16.49■□□□□ 0.23
CLN6-220ENST00000637450 TLDC2A0PJX2 215 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 PEX11AO75192 247 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 TUBBP07437 444 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ADH6P28332 368 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 SHC1P29353 583 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 AGTR1P30556 359 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 CCT3P49368 545 aaKnown RBP16.48■□□□□ 0.23
CLN6-220ENST00000637450 NR1H2P55055 460 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ZNF117Q03924 483 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 KLHL26Q53HC5 615 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 XKR7Q5GH72 579 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ZNF704Q6ZNC4 412 aaPredicted RBP16.48■□□□□ 0.23
CLN6-220ENST00000637450 STK32CQ86UX6 486 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 PHOSPHO1Q8TCT1 267 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ROBO4Q8WZ75 1007 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 OR5P2Q8WZ92 322 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 CHMP6Q96FZ7 201 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 MECRQ9BV79 373 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ACTRT3Q9BYD9 372 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ACTR6Q9GZN1 396 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 CXorf36Q9H7Y0 433 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 SLC17A7Q9P2U7 560 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ICAM5Q9UMF0 924 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 SNX8Q9Y5X2 465 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ACTL7BQ9Y614 415 aa16.48■□□□□ 0.23
CLN6-220ENST00000637450 ZNF195O14628 629 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 OIP5O43482 229 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 LYPLA1O75608 230 aaPredicted RBP16.47■□□□□ 0.23
CLN6-220ENST00000637450 SOX30O94993 753 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 PABPC4LP0CB38 370 aaKnown RBP16.47■□□□□ 0.23
CLN6-220ENST00000637450 PAX1P15863 534 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 PSMB1P20618 241 aaKnown RBP16.47■□□□□ 0.23
CLN6-220ENST00000637450 ATP6V1C1P21283 382 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 ELK4P28324 431 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 SFTPDP35247 375 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 PTH2RP49190 550 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 FOXF1Q12946 379 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 PTGR1Q14914 329 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 ZNF239Q16600 458 aaKnown RBP16.47■□□□□ 0.23
CLN6-220ENST00000637450 C6orf136Q5SQH8 315 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 CBLN3Q6UW01 205 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 NATD1Q8N6N6 113 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 ZNF527Q8NB42 609 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 OR56A1Q8NGH5 318 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 OR2W6PQ8NHA6 318 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 FBXO27Q8NI29 283 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 ADAMTS15Q8TE58 950 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 RNF128Q8TEB7 428 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 NUDT8Q8WV74 236 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 COQ8BQ96D53 544 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 C3orf30Q96M34 536 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 TMEM204Q9BSN7 226 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 C12orf49Q9H741 205 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 TIGARQ9NQ88 270 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 GPATCH2Q9NW75 528 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 CARD8Q9Y2G2 431 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 KCNE3Q9Y6H6 103 aa16.47■□□□□ 0.23
CLN6-220ENST00000637450 ZANQ9Y493 2812 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 TRIM64A6NGJ6 449 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 TRIM64BA6NI03 449 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 SLU7O95391 586 aaKnown RBP16.46■□□□□ 0.23
CLN6-220ENST00000637450 PLAUP00749 431 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 P2RX1P51575 399 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 LSM12Q3MHD2 195 aaKnown RBP16.46■□□□□ 0.23
CLN6-220ENST00000637450 ATP6AP1LQ52LC2 224 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 DCST2Q5T1A1 773 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLN6-220ENST00000637450 IL23RQ5VWK5 629 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 WFDC8Q8IUA0 241 aa16.46■□□□□ 0.23
CLN6-220ENST00000637450 AGR3Q8TD06 166 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms