RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NDUFAF6Q330K2 333 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 EXOSC6Q5RKV6 272 aaKnown RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 CBLN3Q6UW01 205 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 STK32CQ86UX6 486 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 TRABD2AQ86V40 505 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 ZNF619Q8N2I2 560 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 OR7A2PQ8NGA2 310 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 FBXO27Q8NI29 283 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 UBLCP1Q8WVY7 318 aaPredicted RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 ZNF524Q96C55 264 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 ZNF764Q96H86 408 aaPredicted RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 KLHL15Q96M94 604 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 TMEM204Q9BSN7 226 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 GLRX2Q9NS18 164 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 LAMP3Q9UQV4 416 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 CARD8Q9Y2G2 431 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 GPR52Q9Y2T5 361 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 SNX8Q9Y5X2 465 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 KCNE3Q9Y6H6 103 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 ZNF195O14628 629 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 HS3ST1O14792 307 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 PIP5K1BO14986 540 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 NUDT14O95848 222 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 LAMP1P11279 417 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 SERPINB4P48594 390 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 ATP5J2P56134 94 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 PCLAFQ15004 111 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 ZNF239Q16600 458 aaKnown RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 TMEM176BQ3YBM2 270 aaPredicted RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 PDSS1Q5T2R2 415 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 KANK2Q63ZY3 851 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 ATG4DQ86TL0 474 aaPredicted RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 MISPQ8IVT2 679 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 TUSC5Q8IXB3 177 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 ZNF611Q8N823 705 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 MAPK1IP1LQ8NDC0 245 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 LILRB1Q8NHL6 650 aaPredicted RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 KIF18AQ8NI77 898 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 AGR3Q8TD06 166 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 NEUROG1Q92886 237 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 TRIM44Q96DX7 344 aaPredicted RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 BTBD2Q9BX70 525 aa14.39□□□□□ -0.11
CLN3-246ENST00000636228 ZNF701Q9NV72 531 aaPredicted RBP14.39□□□□□ -0.11
CLN3-246ENST00000636228 NSD1Q96L73 2696 aaPredicted RBP14.38□□□□□ -0.11
CLN3-246ENST00000636228 IGHV3-15A0A0B4J1V0 119 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 A0A1W2PQD3 144 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 CLOCKO15516 846 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TRIM13O60858 407 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 PEX11AO75192 247 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 GCM2O75603 506 aaPredicted RBP14.38□□□□□ -0.11
CLN3-246ENST00000636228 CHEK2O96017 543 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 NEFHP12036 1026 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 PSMB1P20618 241 aaKnown RBP14.38□□□□□ -0.11
CLN3-246ENST00000636228 PPP2R2BQ00005 443 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TNK1Q13470 666 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 CAPRIN1Q14444 709 aaKnown RBP14.38□□□□□ -0.11
CLN3-246ENST00000636228 UGT3A2Q3SY77 523 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TMEM201Q5SNT2 666 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.38□□□□□ -0.11
CLN3-246ENST00000636228 GTF2IRD2BQ6EKJ0 949 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 ZCCHC12Q6PEW1 402 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TFAP2EQ6VUC0 442 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 GTF2IRD2Q86UP8 949 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 RNF128Q8TEB7 428 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TWIST2Q8WVJ9 160 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 REXO5Q96IC2 774 aaKnown RBP14.38□□□□□ -0.11
CLN3-246ENST00000636228 MECRQ9BV79 373 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 PIGUQ9H490 435 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 CXorf56Q9H5V9 222 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 CXorf36Q9H7Y0 433 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 ANKZF1Q9H8Y5 726 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 FANCFQ9NPI8 374 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 ATP6V1HQ9UI12 483 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 ADAM21Q9UKJ8 722 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 TRAF6Q9Y4K3 522 aa14.38□□□□□ -0.11
CLN3-246ENST00000636228 C9JVG2 144 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 SCAMP2O15127 329 aaKnown RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 ADAP00813 363 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 PAX1P15863 534 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ATP6V1C1P21283 382 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ENPP1P22413 925 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ALDH3A1P30838 453 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 LCN1P31025 176 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ASMTP46597 345 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 CCT3P49368 545 aaKnown RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 KLHL26Q53HC5 615 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ARL13AQ5H913 290 aaPredicted RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 CDC73Q6P1J9 531 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 R3HCC1LQ7Z5L2 792 aaKnown RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 TDRPQ86YL5 185 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 GABRG1Q8N1C3 465 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 STEAP2Q8NFT2 490 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 RFWD2Q8NHY2 731 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ZNF775Q96BV0 537 aaPredicted RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 MTERF3Q96E29 417 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 TACO1Q9BSH4 297 aaKnown RBP14.37□□□□□ -0.11
CLN3-246ENST00000636228 C1orf50Q9BV19 199 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 HHATLQ9HCP6 504 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 DUSP22Q9NRW4 184 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 ICAM5Q9UMF0 924 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms