RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RIBC1Q8N443 379 aaPredicted RBP16.49■□□□□ 0.23
CLN3-241ENST00000635861 ZNF527Q8NB42 609 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 EPS8L3Q8TE67 593 aaKnown RBP16.49■□□□□ 0.23
CLN3-241ENST00000635861 TWIST2Q8WVJ9 160 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 FAM120BQ96EK7 910 aaKnown RBP16.49■□□□□ 0.23
CLN3-241ENST00000635861 RNF145Q96MT1 663 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 GSX2Q9BZM3 304 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 PIGUQ9H490 435 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 ZCCHC3Q9NUD5 404 aaKnown RBP16.49■□□□□ 0.23
CLN3-241ENST00000635861 GPR52Q9Y2T5 361 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 FIS1Q9Y3D6 152 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 SCAMP2O15127 329 aaKnown RBP16.48■□□□□ 0.23
CLN3-241ENST00000635861 GMFGO60234 142 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 BCKDHAP12694 445 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 PAX1P15863 534 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 SERPINB5P36952 375 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 SLC6A8P48029 635 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 SUMO3P55854 103 aaPredicted RBP16.48■□□□□ 0.23
CLN3-241ENST00000635861 GALNTL6Q49A17 601 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 STAC2Q6ZMT1 411 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 GALNT10Q86SR1 603 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 C4orf33Q8N1A6 199 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 PSMA8Q8TAA3 256 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 ZC3HAV1LQ96H79 300 aaKnown RBP16.48■□□□□ 0.23
CLN3-241ENST00000635861 APOPT1Q96IL0 206 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 KLHL15Q96M94 604 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 HS3ST6Q96QI5 342 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 C12orf65Q9H3J6 166 aaKnown RBP16.48■□□□□ 0.23
CLN3-241ENST00000635861 GP6Q9HCN6 339 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 TIGARQ9NQ88 270 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 ATAD3AQ9NVI7 634 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 BAIAP2L1Q9UHR4 511 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 TRAF6Q9Y4K3 522 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 ACTL7BQ9Y614 415 aa16.48■□□□□ 0.23
CLN3-241ENST00000635861 FN1P02751 2386 aaKnown RBP16.48■□□□□ 0.23
CLN3-241ENST00000635861 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 SMIM23A6NLE4 172 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 GJE1A6NN92 205 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 CXCL13O43927 109 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 LYPLA1O75608 230 aaPredicted RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 SASH3O75995 380 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 HMGN2P05204 90 aaKnown RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 LINGO3P0C6S8 592 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 PSMB1P20618 241 aaKnown RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 ATP6V1C1P21283 382 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 ZSCAN26Q16670 478 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 EXOC3L2Q2M3D2 409 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 UGT3A2Q3SY77 523 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 HBMQ6B0K9 141 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 CDC73Q6P1J9 531 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 PLEKHM3Q6ZWE6 761 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 DDIASQ8IXT1 998 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 GATSQ8NAP1 163 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 OR56A1Q8NGH5 318 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 CLHC1Q8NHS4 586 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 FBXO30Q8TB52 745 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 JADE3Q92613 823 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 CPNE4Q96A23 557 aaPredicted RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 MOAP1Q96BY2 351 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 REXO5Q96IC2 774 aaKnown RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 SMR3AQ99954 134 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 SIRT3Q9NTG7 399 aaPredicted RBP16.47■□□□□ 0.23
CLN3-241ENST00000635861 HIVEP2P31629 2446 aa16.47■□□□□ 0.23
CLN3-241ENST00000635861 A0A0J9YW62 118 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 H3BNH8 94 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 TNFSF11O14788 317 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 KLF4O43474 513 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 THBDP07204 575 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 AGTR1P30556 359 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 RNPS1Q15287 305 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 LSM12Q3MHD2 195 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 C22orf34Q6ZV56 151 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 YTHDF3Q7Z739 585 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 ZAR1Q86SH2 424 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 LILRA2Q8N149 483 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 BANPQ8N9N5 519 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 PPP1R14CQ8TAE6 165 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 POC1BQ8TC44 478 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 OR5P2Q8WZ92 322 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 ARSGQ96EG1 525 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 C16orf58Q96GQ5 468 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 SH3YL1Q96HL8 342 aaPredicted RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 Q96MF0 132 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 PRPF18Q99633 342 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 USB1Q9BQ65 265 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 TACO1Q9BSH4 297 aaKnown RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 HDHD5Q9BXW7 423 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 ACTRT3Q9BYD9 372 aa16.46■□□□□ 0.23
CLN3-241ENST00000635861 GPC6Q9Y625 555 aaPredicted RBP16.46■□□□□ 0.23
CLN3-241ENST00000635861 PIP5K1BO14986 540 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 NID1P14543 1247 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 P2RX1P51575 399 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CARD18P57730 90 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 LASP1Q14847 261 aaKnown RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 ATP6AP1LQ52LC2 224 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 XKR7Q5GH72 579 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ARL13AQ5H913 290 aaPredicted RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 ANKRD34AQ69YU3 496 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ZNF704Q6ZNC4 412 aaPredicted RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 STEAP2Q8NFT2 490 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms