RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 BRD3OSQ6XYD6 125 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 VPS36Q86VN1 386 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 CCDC36Q8IYA8 594 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SFRP1Q8N474 314 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 NKAIN3Q8N8D7 197 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 PTP4A1Q93096 173 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SNX21Q969T3 373 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF641Q96N77 438 aaPredicted RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 TXN2Q99757 166 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 COQ7Q99807 217 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SPIN2AQ99865 258 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SPIN2BQ9BPZ2 258 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 FTHL17Q9BXU8 183 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 NFKBIZQ9BYH8 718 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 KAT8Q9H7Z6 458 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 CAB39LQ9H9S4 337 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 CWC25Q9NXE8 425 aaPredicted RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ANKMY1Q9P2S6 941 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 GALPQ9UBC7 116 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF490Q9ULM2 529 aaPredicted RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 SAMD4AQ9UPU9 718 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 TDRKHQ9Y2W6 561 aaKnown RBP1.27□□□□□ -2.21
SCN1A-208ENST00000625916 WDR45Q9Y484 360 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 WIF1Q9Y5W5 379 aa1.27□□□□□ -2.21
SCN1A-208ENST00000625916 IGHV1OR15-1A0A075B7D0 117 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 GJE1A6NN92 205 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 H0YL77 283 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 H3BTX0 84 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 CASKO14936 926 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ALOX15BO15296 676 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ZBTB14O43829 449 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 EFNA2O43921 213 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 GOSR1O95249 250 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 CHRNA1P02708 482 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 CENPBP07199 599 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 THRBP10828 461 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 TSPAN8P19075 237 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 CTNNA1P35221 906 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 HTR5AP47898 357 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 STARP49675 285 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 APOC4P55056 127 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 SRP54P61011 504 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 RPL8P62917 257 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 MYBPC1Q00872 1141 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 MEF2BQ02080 365 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 FUT7Q11130 342 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ZSWIM7Q19AV6 140 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 PAGE3Q5JUK9 113 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 IL23RQ5VWK5 629 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 OR8G2PQ6IF36 304 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 SCYL2Q6P3W7 929 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 STAC2Q6ZMT1 411 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 RNF165Q6ZSG1 346 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 PAQR9Q6ZVX9 377 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 LRRC70Q7Z2Q7 622 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 KRT77Q7Z794 578 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 HMGN2P46Q86SG4 172 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 LCA5Q86VQ0 697 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 SERPINA9Q86WD7 417 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 IQCA1Q86XH1 822 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 MYOCDQ8IZQ8 938 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ARRDC1Q8N5I2 433 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ARFGAP2Q8N6H7 521 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 TMEM252Q8N6L7 170 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 TMEM185AQ8NFB2 350 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 OR9A4Q8NGU2 314 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 TRUB1Q8WWH5 349 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 IL1F10Q8WWZ1 152 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 CHCHD10Q8WYQ3 142 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 PIGCQ92535 297 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 RNF185Q96GF1 192 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 PELOQ9BRX2 385 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 C2orf40Q9H1Z8 148 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 COG4Q9H9E3 785 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 SH2D2AQ9NP31 389 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 ARGLU1Q9NWB6 273 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 HMG20BQ9P0W2 317 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 UBQLN1Q9UMX0 589 aaKnown RBP1.26□□□□□ -2.21
SCN1A-208ENST00000625916 MAB21L2Q9Y586 359 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 GMPPBQ9Y5P6 360 aa1.26□□□□□ -2.21
SCN1A-208ENST00000625916 SCN2AQ99250 2005 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 TRBV2A0A0J9YWF9 115 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 B4GALT2O60909 372 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 N4BP1O75113 896 aaKnown RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 IGHV3-48P01763 117 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 CSF2P04141 144 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 MRPL3P09001 348 aaKnown RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 GSTT2P0CG29 244 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 GSTT2BP0CG30 244 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 H2AFXP16104 143 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 COPB2P35606 906 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 KIR2DS2P43631 304 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 TFPI2P48307 235 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 NOVA1P51513 510 aaKnown RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 CDKN3Q16667 212 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 C5orf47Q569G3 176 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 DNAJC21Q5F1R6 531 aaKnown RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 SLC39A4Q6P5W5 647 aa1.25□□□□□ -2.21
SCN1A-208ENST00000625916 C17orf82Q86X59 251 aaPredicted RBP1.25□□□□□ -2.21
SCN1A-208ENST00000625916 SKA3Q8IX90 412 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms